Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Coq4-201ENSMUST00000028137 1991 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Hmgb3O54879 Gm37500-201ENSMUST00000192059 1443 ntBASIC11.5□□□□□ -0.57
Hmgb3O54879 Ano6-201ENSMUST00000071874 4927 ntAPPRIS P2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Hmgb3O54879 Aco1-201ENSMUST00000102973 3832 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Hmgb3O54879 Col4a3-201ENSMUST00000113457 8554 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Hmgb3O54879 Dpysl4-202ENSMUST00000121184 2727 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Hmgb3O54879 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Hmgb3O54879 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Hmgb3O54879 Gnb2-212ENSMUST00000150063 1569 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Hmgb3O54879 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Hmgb3O54879 Gm9252-201ENSMUST00000172364 1602 ntBASIC11.49□□□□□ -0.57
Hmgb3O54879 P2rx7-203ENSMUST00000100737 4936 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Hmgb3O54879 Prss36-201ENSMUST00000094026 3061 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
Hmgb3O54879 Fbxl20-201ENSMUST00000103143 8601 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Hmgb3O54879 Dhx58-201ENSMUST00000017974 2412 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Hmgb3O54879 Usp19-204ENSMUST00000178075 4512 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Hmgb3O54879 Usp19-202ENSMUST00000085044 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Hmgb3O54879 Gm14812-201ENSMUST00000156494 1794 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Hmgb3O54879 Arrdc4-201ENSMUST00000048068 3905 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
Hmgb3O54879 Il15-201ENSMUST00000034148 1908 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Hmgb3O54879 Il12rb1-205ENSMUST00000212657 2741 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
Hmgb3O54879 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Hmgb3O54879 Ptch2-201ENSMUST00000030443 4382 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Hmgb3O54879 Extl3-203ENSMUST00000225633 6013 ntAPPRIS P1 BASIC11.49□□□□□ -0.57
Hmgb3O54879 Synpo-202ENSMUST00000115318 4479 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Hmgb3O54879 Wls-205ENSMUST00000198878 2050 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Hmgb3O54879 Rnf185-201ENSMUST00000064364 2906 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Hmgb3O54879 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Hmgb3O54879 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC11.49□□□□□ -0.57
Hmgb3O54879 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC11.49□□□□□ -0.57
Hmgb3O54879 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Hmgb3O54879 Gm4691-201ENSMUST00000182339 1000 ntBASIC11.49□□□□□ -0.57
Hmgb3O54879 Gm2451-201ENSMUST00000199447 999 ntBASIC11.49□□□□□ -0.57
Hmgb3O54879 Gm10290-201ENSMUST00000200451 999 ntBASIC11.49□□□□□ -0.57
Hmgb3O54879 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC11.49□□□□□ -0.57
Hmgb3O54879 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Hmgb3O54879 AC154757.1-201ENSMUST00000228289 336 ntBASIC11.49□□□□□ -0.57
Hmgb3O54879 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Hmgb3O54879 Dph3-202ENSMUST00000067955 2953 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Hmgb3O54879 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Hmgb3O54879 Vcan-202ENSMUST00000109544 5702 ntTSL 5 BASIC11.49□□□□□ -0.57
Hmgb3O54879 Gm3928-201ENSMUST00000121141 1307 ntBASIC11.49□□□□□ -0.57
Hmgb3O54879 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC11.49□□□□□ -0.57
Hmgb3O54879 Muc6-202ENSMUST00000189314 5087 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Hmgb3O54879 Has3-203ENSMUST00000176144 4150 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Hmgb3O54879 Ebf1-202ENSMUST00000101326 3422 ntAPPRIS ALT1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Hmgb3O54879 Dab2ip-201ENSMUST00000065001 6392 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
Hmgb3O54879 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Hmgb3O54879 Gm20708-201ENSMUST00000132298 1780 ntAPPRIS P1 TSL 2 BASIC11.49□□□□□ -0.57
Hmgb3O54879 Cant1-202ENSMUST00000092378 2995 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Hmgb3O54879 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Hmgb3O54879 Sesn3-201ENSMUST00000034507 1827 ntTSL 5 BASIC11.49□□□□□ -0.57
Hmgb3O54879 Otud7b-202ENSMUST00000090785 8101 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Hmgb3O54879 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Hmgb3O54879 Exd1-201ENSMUST00000060009 6042 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Hmgb3O54879 Map6-201ENSMUST00000068973 3430 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
Hmgb3O54879 Cttnbp2nl-201ENSMUST00000077548 4946 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Hmgb3O54879 Muc20-201ENSMUST00000041123 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Hmgb3O54879 Adcy8-201ENSMUST00000023007 6990 ntAPPRIS P2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Hmgb3O54879 Ppp6r1-201ENSMUST00000064099 3862 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Hmgb3O54879 Hnf1b-203ENSMUST00000108114 2659 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Hmgb3O54879 Tpk1-201ENSMUST00000067888 2671 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Hmgb3O54879 Oxr1-204ENSMUST00000110297 4596 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Hmgb3O54879 Pias3-202ENSMUST00000107076 2858 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Hmgb3O54879 Stxbp2-207ENSMUST00000160708 2908 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Hmgb3O54879 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Hmgb3O54879 Sema4a-214ENSMUST00000166237 3046 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Hmgb3O54879 Fam222b-201ENSMUST00000073705 3258 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Hmgb3O54879 Ptprt-204ENSMUST00000109445 12082 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
Hmgb3O54879 Gatad2a-206ENSMUST00000212478 3622 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
Hmgb3O54879 Lypd6-201ENSMUST00000053208 3620 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Hmgb3O54879 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC11.48□□□□□ -0.57
Hmgb3O54879 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Hmgb3O54879 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Hmgb3O54879 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC11.48□□□□□ -0.57
Hmgb3O54879 Olfr286-202ENSMUST00000205305 969 ntBASIC11.48□□□□□ -0.57
Hmgb3O54879 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC11.48□□□□□ -0.57
Hmgb3O54879 Gm20337-201ENSMUST00000219062 1118 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Hmgb3O54879 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Hmgb3O54879 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
Hmgb3O54879 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Hmgb3O54879 Vdac3-201ENSMUST00000009036 1354 ntAPPRIS P2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Hmgb3O54879 Gm17619-201ENSMUST00000180625 1449 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Hmgb3O54879 Vps4b-202ENSMUST00000112736 4539 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Hmgb3O54879 Spsb1-203ENSMUST00000105685 1537 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Hmgb3O54879 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
Hmgb3O54879 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
Hmgb3O54879 Ppp1r8-201ENSMUST00000030702 2037 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
Hmgb3O54879 Rbbp7-201ENSMUST00000033720 2244 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Hmgb3O54879 Wnt7a-201ENSMUST00000032180 3172 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Hmgb3O54879 Acacb-202ENSMUST00000102582 8788 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
Hmgb3O54879 Fer1l4-201ENSMUST00000109611 6106 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
Hmgb3O54879 Grm2-201ENSMUST00000023959 4711 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
Hmgb3O54879 Cacna2d1-201ENSMUST00000039370 3933 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Hmgb3O54879 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Hmgb3O54879 Vrtn-201ENSMUST00000095551 3028 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Hmgb3O54879 Sec16a-201ENSMUST00000091252 8737 ntAPPRIS P2 TSL 5 BASIC11.47□□□□□ -0.57
Hmgb3O54879 Gm9920-204ENSMUST00000148544 2752 ntTSL 2 BASIC11.47□□□□□ -0.57
Hmgb3O54879 4833439L19Rik-201ENSMUST00000026989 2727 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Hmgb3O54879 Zfp583-201ENSMUST00000062765 2550 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 102 ms