Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Txnrd1-206ENSMUST00000219442 3531 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
Usp40Q8BWR4 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Usp40Q8BWR4 Gm26747-201ENSMUST00000180597 1716 ntTSL 5 BASIC18.99■□□□□ 0.63
Usp40Q8BWR4 Mff-201ENSMUST00000073025 1706 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Usp40Q8BWR4 Mcidas-201ENSMUST00000092089 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Usp40Q8BWR4 Plcb3-201ENSMUST00000025912 4201 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Usp40Q8BWR4 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC18.99■□□□□ 0.63
Usp40Q8BWR4 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Usp40Q8BWR4 Gm20632-201ENSMUST00000176760 2427 ntBASIC18.99■□□□□ 0.63
Usp40Q8BWR4 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Usp40Q8BWR4 Pcgf2-201ENSMUST00000018681 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Usp40Q8BWR4 Crhr2-201ENSMUST00000003568 2695 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Usp40Q8BWR4 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
Usp40Q8BWR4 Clcf1-201ENSMUST00000046506 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Usp40Q8BWR4 Haus7-201ENSMUST00000033737 1380 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
Usp40Q8BWR4 Ano8-201ENSMUST00000093450 3653 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Usp40Q8BWR4 Leng8-202ENSMUST00000117274 874 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Usp40Q8BWR4 Gm12742-201ENSMUST00000117326 410 ntBASIC18.98■□□□□ 0.63
Usp40Q8BWR4 Grp-202ENSMUST00000173530 617 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
Usp40Q8BWR4 Gm27731-201ENSMUST00000185192 107 ntBASIC18.98■□□□□ 0.63
Usp40Q8BWR4 AC073947.2-201ENSMUST00000215888 1130 ntBASIC18.98■□□□□ 0.63
Usp40Q8BWR4 Gm17330-201ENSMUST00000221047 165 ntBASIC18.98■□□□□ 0.63
Usp40Q8BWR4 Sdf4-202ENSMUST00000097734 973 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Usp40Q8BWR4 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Usp40Q8BWR4 Sh3bp5-201ENSMUST00000091903 2684 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
Usp40Q8BWR4 Rassf5-203ENSMUST00000112442 3388 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Usp40Q8BWR4 Abhd6-202ENSMUST00000166497 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Usp40Q8BWR4 Saraf-201ENSMUST00000033933 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Usp40Q8BWR4 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Usp40Q8BWR4 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Usp40Q8BWR4 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
Usp40Q8BWR4 Hnrnpa1-201ENSMUST00000036004 1918 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Usp40Q8BWR4 0610006L08Rik-201ENSMUST00000205326 1589 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Usp40Q8BWR4 Stat3-201ENSMUST00000092671 2927 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Usp40Q8BWR4 Diras2-201ENSMUST00000057442 4786 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Usp40Q8BWR4 Flt1-202ENSMUST00000031653 6895 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Usp40Q8BWR4 Gm37736-201ENSMUST00000193564 2802 ntBASIC18.97■□□□□ 0.63
Usp40Q8BWR4 Rapsn-202ENSMUST00000111445 1450 ntTSL 5 BASIC18.97■□□□□ 0.63
Usp40Q8BWR4 Cryzl1-201ENSMUST00000073466 1965 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Usp40Q8BWR4 Clstn1-202ENSMUST00000105691 4459 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Usp40Q8BWR4 Mapk8ip3-203ENSMUST00000115229 5603 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
Usp40Q8BWR4 Senp6-202ENSMUST00000164859 3853 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Usp40Q8BWR4 Rgs6-204ENSMUST00000185674 1362 ntTSL 5 BASIC18.97■□□□□ 0.63
Usp40Q8BWR4 Dhx33-202ENSMUST00000108527 5184 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Usp40Q8BWR4 Cnbd2-202ENSMUST00000073942 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Usp40Q8BWR4 Timm10b-202ENSMUST00000106780 671 ntAPPRIS P2 TSL 2 BASIC18.97■□□□□ 0.63
Usp40Q8BWR4 Mir1938-201ENSMUST00000158746 100 ntBASIC18.97■□□□□ 0.63
Usp40Q8BWR4 Synj2bp-205ENSMUST00000169158 691 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Usp40Q8BWR4 1700122O11Rik-201ENSMUST00000178823 771 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Usp40Q8BWR4 Gstt2-203ENSMUST00000218500 794 ntTSL 5 BASIC18.97■□□□□ 0.63
Usp40Q8BWR4 Gm17870-201ENSMUST00000219489 1174 ntBASIC18.97■□□□□ 0.63
Usp40Q8BWR4 Naa10-201ENSMUST00000033763 962 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
Usp40Q8BWR4 Gm10710-201ENSMUST00000047876 3971 ntBASIC18.97■□□□□ 0.63
Usp40Q8BWR4 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Usp40Q8BWR4 Il15-201ENSMUST00000034148 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Usp40Q8BWR4 Gm43697-201ENSMUST00000199637 2581 ntBASIC18.97■□□□□ 0.63
Usp40Q8BWR4 Wnk2-207ENSMUST00000159559 6584 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
Usp40Q8BWR4 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Usp40Q8BWR4 Mbp-203ENSMUST00000075372 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Usp40Q8BWR4 Gpsm1-203ENSMUST00000078616 3127 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Usp40Q8BWR4 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Usp40Q8BWR4 Cyp4f37-201ENSMUST00000077639 2642 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Usp40Q8BWR4 Zfp853-201ENSMUST00000180336 1956 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
Usp40Q8BWR4 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
Usp40Q8BWR4 Ociad2-205ENSMUST00000201908 2378 ntTSL 2 BASIC18.97■□□□□ 0.63
Usp40Q8BWR4 Msx3-201ENSMUST00000055353 2356 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Usp40Q8BWR4 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Usp40Q8BWR4 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Usp40Q8BWR4 Dda1-206ENSMUST00000138892 1738 ntTSL 3 BASIC18.97■□□□□ 0.63
Usp40Q8BWR4 Sowaha-201ENSMUST00000104955 3702 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
Usp40Q8BWR4 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
Usp40Q8BWR4 Klc1-203ENSMUST00000120544 2261 ntAPPRIS ALT1 TSL 5 BASIC18.97■□□□□ 0.63
Usp40Q8BWR4 Tbl1x-201ENSMUST00000088217 5234 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Usp40Q8BWR4 Gpc1-201ENSMUST00000045970 4176 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Usp40Q8BWR4 A930033H14Rik-201ENSMUST00000170048 2969 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Usp40Q8BWR4 Gm26878-201ENSMUST00000181778 1644 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Usp40Q8BWR4 Tuft1-203ENSMUST00000196655 2156 ntTSL 5 BASIC18.96■□□□□ 0.63
Usp40Q8BWR4 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Usp40Q8BWR4 Acox1-201ENSMUST00000066587 3987 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
Usp40Q8BWR4 Gm9200-201ENSMUST00000118513 1354 ntBASIC18.96■□□□□ 0.63
Usp40Q8BWR4 Lurap1l-201ENSMUST00000055922 3066 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Usp40Q8BWR4 Hes2-201ENSMUST00000030782 2521 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Usp40Q8BWR4 Eif3f-201ENSMUST00000033342 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Usp40Q8BWR4 Chd1-205ENSMUST00000173311 4211 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Usp40Q8BWR4 Gm12537-201ENSMUST00000119266 1002 ntBASIC18.96■□□□□ 0.63
Usp40Q8BWR4 Gm12070-201ENSMUST00000119551 1002 ntBASIC18.96■□□□□ 0.63
Usp40Q8BWR4 Gm12671-201ENSMUST00000119978 1002 ntBASIC18.96■□□□□ 0.63
Usp40Q8BWR4 Gm13292-201ENSMUST00000120014 1000 ntBASIC18.96■□□□□ 0.63
Usp40Q8BWR4 Gm12403-201ENSMUST00000121384 959 ntBASIC18.96■□□□□ 0.63
Usp40Q8BWR4 4930407G08Rik-201ENSMUST00000145831 698 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Usp40Q8BWR4 Gm6152-201ENSMUST00000151704 340 ntBASIC18.96■□□□□ 0.63
Usp40Q8BWR4 Ube4bos1-202ENSMUST00000151896 1286 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Usp40Q8BWR4 Txnl4b-202ENSMUST00000178445 830 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Usp40Q8BWR4 Proscos-202ENSMUST00000178990 666 ntBASIC18.96■□□□□ 0.63
Usp40Q8BWR4 Gm10359-201ENSMUST00000180167 1002 ntBASIC18.96■□□□□ 0.63
Usp40Q8BWR4 Gm12033-201ENSMUST00000180654 1002 ntBASIC18.96■□□□□ 0.63
Usp40Q8BWR4 Gm5559-201ENSMUST00000180755 1002 ntBASIC18.96■□□□□ 0.63
Usp40Q8BWR4 Gm4335-201ENSMUST00000182581 1004 ntBASIC18.96■□□□□ 0.63
Usp40Q8BWR4 Gm9124-201ENSMUST00000191789 1092 ntBASIC18.96■□□□□ 0.63
Usp40Q8BWR4 Gm9113-201ENSMUST00000192510 1018 ntBASIC18.96■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 47.6 ms