Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Ddi2-202ENSMUST00000177592 3539 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Sh3rf1Q69ZI1 Tex13a-201ENSMUST00000096314 1317 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
Sh3rf1Q69ZI1 A230077H06Rik-201ENSMUST00000188579 2918 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Sh3rf1Q69ZI1 Cog7-201ENSMUST00000057576 2902 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sh3rf1Q69ZI1 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Sh3rf1Q69ZI1 Gm2155-201ENSMUST00000181581 1974 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Sh3rf1Q69ZI1 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Sh3rf1Q69ZI1 Nat8f6-202ENSMUST00000174143 1571 ntAPPRIS P1 TSL 3 BASIC14.14□□□□□ -0.15
Sh3rf1Q69ZI1 Dock4-201ENSMUST00000037488 8552 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sh3rf1Q69ZI1 Ptger3-201ENSMUST00000041175 3148 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sh3rf1Q69ZI1 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Sh3rf1Q69ZI1 Fhad1-201ENSMUST00000036701 1366 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Sh3rf1Q69ZI1 AI467606-201ENSMUST00000056288 1932 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sh3rf1Q69ZI1 Vdac3-201ENSMUST00000009036 1354 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sh3rf1Q69ZI1 Tspyl5-201ENSMUST00000042021 4010 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Sh3rf1Q69ZI1 Kansl3-205ENSMUST00000186470 2801 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Sh3rf1Q69ZI1 Gm6415-201ENSMUST00000118488 348 ntBASIC14.14□□□□□ -0.15
Sh3rf1Q69ZI1 Gm12151-201ENSMUST00000121374 290 ntBASIC14.14□□□□□ -0.15
Sh3rf1Q69ZI1 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Sh3rf1Q69ZI1 AC155937.1-202ENSMUST00000156229 621 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
Sh3rf1Q69ZI1 Khdc3-202ENSMUST00000167514 1251 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Sh3rf1Q69ZI1 Gm8584-201ENSMUST00000171982 758 ntBASIC14.14□□□□□ -0.15
Sh3rf1Q69ZI1 Ube2i-208ENSMUST00000173084 1286 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sh3rf1Q69ZI1 Gm9824-201ENSMUST00000178707 561 ntBASIC14.14□□□□□ -0.15
Sh3rf1Q69ZI1 Gm38225-201ENSMUST00000194001 393 ntBASIC14.14□□□□□ -0.15
Sh3rf1Q69ZI1 Gm5186-201ENSMUST00000218781 920 ntBASIC14.14□□□□□ -0.15
Sh3rf1Q69ZI1 Plxnb1-201ENSMUST00000072093 8649 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sh3rf1Q69ZI1 Xpot-201ENSMUST00000039810 5992 ntTSL 5 BASIC14.14□□□□□ -0.15
Sh3rf1Q69ZI1 Eif2b2-201ENSMUST00000004910 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sh3rf1Q69ZI1 Eps8l1-214ENSMUST00000171445 2975 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Sh3rf1Q69ZI1 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sh3rf1Q69ZI1 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sh3rf1Q69ZI1 Nol10-201ENSMUST00000046011 3021 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sh3rf1Q69ZI1 Aff2-201ENSMUST00000033532 4523 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sh3rf1Q69ZI1 Ylpm1-207ENSMUST00000168977 4893 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Sh3rf1Q69ZI1 Casc4-202ENSMUST00000089912 3602 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Sh3rf1Q69ZI1 Ly9-202ENSMUST00000068878 2488 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sh3rf1Q69ZI1 Taf2-201ENSMUST00000041733 5031 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sh3rf1Q69ZI1 Gm18244-201ENSMUST00000219747 1566 ntBASIC14.13□□□□□ -0.15
Sh3rf1Q69ZI1 Il15-201ENSMUST00000034148 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sh3rf1Q69ZI1 Wdr5-201ENSMUST00000113952 2890 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sh3rf1Q69ZI1 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sh3rf1Q69ZI1 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sh3rf1Q69ZI1 Tigd2-201ENSMUST00000062626 3007 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sh3rf1Q69ZI1 Adamts15-201ENSMUST00000065112 5928 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sh3rf1Q69ZI1 Fam53b-203ENSMUST00000097999 5465 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sh3rf1Q69ZI1 4930556M19Rik-201ENSMUST00000180604 2468 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Sh3rf1Q69ZI1 Eif1ad-201ENSMUST00000025759 2469 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sh3rf1Q69ZI1 Lrig2-205ENSMUST00000198332 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sh3rf1Q69ZI1 Smarca5-201ENSMUST00000043359 6113 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sh3rf1Q69ZI1 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Sh3rf1Q69ZI1 Abhd11-202ENSMUST00000111216 972 ntTSL 3 BASIC14.13□□□□□ -0.15
Sh3rf1Q69ZI1 Zfp637-202ENSMUST00000112859 421 ntTSL 2 BASIC14.13□□□□□ -0.15
Sh3rf1Q69ZI1 Gm8410-201ENSMUST00000117225 605 ntBASIC14.13□□□□□ -0.15
Sh3rf1Q69ZI1 Gm18737-201ENSMUST00000173594 937 ntBASIC14.13□□□□□ -0.15
Sh3rf1Q69ZI1 Mir6977-201ENSMUST00000184960 64 ntBASIC14.13□□□□□ -0.15
Sh3rf1Q69ZI1 Gm17837-201ENSMUST00000186435 985 ntBASIC14.13□□□□□ -0.15
Sh3rf1Q69ZI1 Panct2-202ENSMUST00000188631 625 ntTSL 3 BASIC14.13□□□□□ -0.15
Sh3rf1Q69ZI1 Gm38294-201ENSMUST00000192831 381 ntBASIC14.13□□□□□ -0.15
Sh3rf1Q69ZI1 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Sh3rf1Q69ZI1 Gm31816-201ENSMUST00000209388 1294 ntTSL 5 BASIC14.13□□□□□ -0.15
Sh3rf1Q69ZI1 5830408C22Rik-201ENSMUST00000210072 1115 ntTSL 5 BASIC14.13□□□□□ -0.15
Sh3rf1Q69ZI1 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Sh3rf1Q69ZI1 Rit1-201ENSMUST00000029692 1204 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sh3rf1Q69ZI1 Acin1-216ENSMUST00000141453 2381 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Sh3rf1Q69ZI1 Hnrnpul1-201ENSMUST00000043765 3354 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Sh3rf1Q69ZI1 Pla2g5-204ENSMUST00000102513 2289 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Sh3rf1Q69ZI1 Morc4-202ENSMUST00000087401 3862 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sh3rf1Q69ZI1 Akt2-ps-201ENSMUST00000120718 1449 ntBASIC14.13□□□□□ -0.15
Sh3rf1Q69ZI1 Usp19-201ENSMUST00000006854 4791 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sh3rf1Q69ZI1 Tpk1-201ENSMUST00000067888 2671 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sh3rf1Q69ZI1 Gm36839-201ENSMUST00000222088 2093 ntTSL 5 BASIC14.13□□□□□ -0.15
Sh3rf1Q69ZI1 Slc25a47-201ENSMUST00000057026 1580 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sh3rf1Q69ZI1 Crybg1-201ENSMUST00000020017 6608 ntAPPRIS P2 TSL 5 BASIC14.13□□□□□ -0.15
Sh3rf1Q69ZI1 Clec11a-201ENSMUST00000004587 2978 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sh3rf1Q69ZI1 Gpc5-201ENSMUST00000022707 1719 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Sh3rf1Q69ZI1 Psph-201ENSMUST00000031399 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Sh3rf1Q69ZI1 Sf3a1-201ENSMUST00000002198 4920 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Sh3rf1Q69ZI1 Arnt-201ENSMUST00000015666 2603 ntTSL 5 BASIC14.12□□□□□ -0.15
Sh3rf1Q69ZI1 Ces1h-201ENSMUST00000145041 1870 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Sh3rf1Q69ZI1 Myo1d-201ENSMUST00000041065 5354 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Sh3rf1Q69ZI1 Camkk2-201ENSMUST00000111668 4861 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Sh3rf1Q69ZI1 Foxred2-201ENSMUST00000016696 4793 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Sh3rf1Q69ZI1 Trnt1-203ENSMUST00000113248 1398 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Sh3rf1Q69ZI1 Zscan29-205ENSMUST00000163766 3611 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Sh3rf1Q69ZI1 Plk4-203ENSMUST00000203295 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Sh3rf1Q69ZI1 Olfr533-203ENSMUST00000215308 2345 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Sh3rf1Q69ZI1 Inpp5a-202ENSMUST00000097975 2301 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Sh3rf1Q69ZI1 Ncam2-201ENSMUST00000037785 4893 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Sh3rf1Q69ZI1 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC14.12□□□□□ -0.15
Sh3rf1Q69ZI1 Gm13223-201ENSMUST00000118609 747 ntBASIC14.12□□□□□ -0.15
Sh3rf1Q69ZI1 Dph3-205ENSMUST00000124303 809 ntTSL 2 BASIC14.12□□□□□ -0.15
Sh3rf1Q69ZI1 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC14.12□□□□□ -0.15
Sh3rf1Q69ZI1 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC14.12□□□□□ -0.15
Sh3rf1Q69ZI1 2410080I02Rik-201ENSMUST00000142712 414 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Sh3rf1Q69ZI1 Ly6g6e-204ENSMUST00000172959 501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Sh3rf1Q69ZI1 Gm27618-201ENSMUST00000183671 60 ntBASIC14.12□□□□□ -0.15
Sh3rf1Q69ZI1 Gm8597-201ENSMUST00000191525 1109 ntBASIC14.12□□□□□ -0.15
Sh3rf1Q69ZI1 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Sh3rf1Q69ZI1 Pja1-203ENSMUST00000113792 3038 ntAPPRIS P4 TSL 5 BASIC14.12□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 66.2 ms