Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim28Q62318 Cant1-203ENSMUST00000106287 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim28Q62318 Gm29455-201ENSMUST00000186504 2659 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Trim28Q62318 Rimkla-201ENSMUST00000049994 4097 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim28Q62318 Ddx27-201ENSMUST00000018143 2714 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim28Q62318 Csad-201ENSMUST00000023805 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim28Q62318 Slc6a4-202ENSMUST00000108402 2796 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
Trim28Q62318 Ces1h-201ENSMUST00000145041 1870 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
Trim28Q62318 Saraf-201ENSMUST00000033933 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim28Q62318 Ldhal6b-201ENSMUST00000189788 1445 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
Trim28Q62318 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim28Q62318 Gm14660-201ENSMUST00000119809 575 ntBASIC17.93■□□□□ 0.46
Trim28Q62318 Gm8810-201ENSMUST00000172895 754 ntBASIC17.93■□□□□ 0.46
Trim28Q62318 Gm9124-201ENSMUST00000191789 1092 ntBASIC17.93■□□□□ 0.46
Trim28Q62318 Gm9113-201ENSMUST00000192510 1018 ntBASIC17.93■□□□□ 0.46
Trim28Q62318 Gm9131-201ENSMUST00000193557 1089 ntBASIC17.93■□□□□ 0.46
Trim28Q62318 Gm38230-201ENSMUST00000193572 1159 ntBASIC17.93■□□□□ 0.46
Trim28Q62318 Gm9121-201ENSMUST00000193749 1071 ntBASIC17.93■□□□□ 0.46
Trim28Q62318 1810059H22Rik-208ENSMUST00000204941 642 ntTSL 2 BASIC17.93■□□□□ 0.46
Trim28Q62318 Gm867-202ENSMUST00000219979 714 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
Trim28Q62318 Hcfc1r1-201ENSMUST00000024697 946 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim28Q62318 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim28Q62318 Prdx2-203ENSMUST00000109734 1612 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
Trim28Q62318 Gpr19-208ENSMUST00000165392 1643 ntTSL 3 BASIC17.93■□□□□ 0.46
Trim28Q62318 Gpr19-202ENSMUST00000066107 1647 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Trim28Q62318 Cpped1-203ENSMUST00000121750 2614 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Trim28Q62318 Mindy3-201ENSMUST00000028105 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim28Q62318 Xiap-203ENSMUST00000115094 6542 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
Trim28Q62318 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim28Q62318 Atxn7l1-202ENSMUST00000090597 2563 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Trim28Q62318 Snx12-202ENSMUST00000120389 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim28Q62318 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim28Q62318 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim28Q62318 Serpine3-201ENSMUST00000171692 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim28Q62318 Olfm1-202ENSMUST00000100244 2686 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Trim28Q62318 Olfr533-203ENSMUST00000215308 2345 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
Trim28Q62318 Gm11638-201ENSMUST00000153672 1615 ntTSL 2 BASIC17.92■□□□□ 0.46
Trim28Q62318 Lsm2-202ENSMUST00000114011 840 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim28Q62318 Gm8213-201ENSMUST00000118191 441 ntBASIC17.92■□□□□ 0.46
Trim28Q62318 Ecscr-204ENSMUST00000133064 1055 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
Trim28Q62318 Umad1-206ENSMUST00000160705 624 ntAPPRIS P4 TSL 2 BASIC17.92■□□□□ 0.46
Trim28Q62318 Ccdc70-201ENSMUST00000017193 1054 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim28Q62318 Grp-202ENSMUST00000173530 617 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
Trim28Q62318 Gm29649-201ENSMUST00000185649 419 ntBASIC17.92■□□□□ 0.46
Trim28Q62318 Cryaa-201ENSMUST00000019192 1176 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Trim28Q62318 Gm44170-201ENSMUST00000203181 549 ntTSL 5 BASIC17.92■□□□□ 0.46
Trim28Q62318 Dera-204ENSMUST00000203216 688 ntTSL 5 BASIC17.92■□□□□ 0.46
Trim28Q62318 Tgif2-ps1-201ENSMUST00000203590 713 ntBASIC17.92■□□□□ 0.46
Trim28Q62318 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
Trim28Q62318 Ecscr-201ENSMUST00000097618 1114 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim28Q62318 Sohlh2-201ENSMUST00000029369 2364 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim28Q62318 Gm11992-201ENSMUST00000043285 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim28Q62318 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim28Q62318 Nsd3-211ENSMUST00000155861 2834 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Trim28Q62318 Lrp11-203ENSMUST00000130590 3220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim28Q62318 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Trim28Q62318 Serinc1-201ENSMUST00000020027 2880 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim28Q62318 Zfp212-201ENSMUST00000009411 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim28Q62318 Plch2-208ENSMUST00000145662 1818 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Trim28Q62318 Trim26-202ENSMUST00000123715 1406 ntTSL 5 BASIC17.91■□□□□ 0.46
Trim28Q62318 Rtp3-201ENSMUST00000084922 1425 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
Trim28Q62318 Usp38-201ENSMUST00000042724 4707 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim28Q62318 Mme-206ENSMUST00000194150 3345 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim28Q62318 Ric8b-202ENSMUST00000095385 2909 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim28Q62318 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim28Q62318 Pdlim7-201ENSMUST00000046246 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim28Q62318 Gm11400-201ENSMUST00000120853 1214 ntBASIC17.91■□□□□ 0.46
Trim28Q62318 Gm11261-203ENSMUST00000132470 838 ntTSL 5 BASIC17.91■□□□□ 0.46
Trim28Q62318 9330198N18Rik-201ENSMUST00000146702 1247 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Trim28Q62318 Shisa5-203ENSMUST00000154184 1038 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Trim28Q62318 Gm24644-201ENSMUST00000157114 139 ntBASIC17.91■□□□□ 0.46
Trim28Q62318 Gm15851-201ENSMUST00000160564 662 ntTSL 3 BASIC17.91■□□□□ 0.46
Trim28Q62318 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC17.91■□□□□ 0.46
Trim28Q62318 AC122459.1-201ENSMUST00000228373 885 ntBASIC17.91■□□□□ 0.46
Trim28Q62318 Fau-201ENSMUST00000043074 574 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim28Q62318 Tpd52-204ENSMUST00000094381 1074 ntTSL 3 BASIC17.91■□□□□ 0.46
Trim28Q62318 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim28Q62318 Dnm1-205ENSMUST00000113365 3257 ntAPPRIS ALT1 TSL 5 BASIC17.91■□□□□ 0.46
Trim28Q62318 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim28Q62318 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim28Q62318 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim28Q62318 Gm15336-201ENSMUST00000128894 1571 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Trim28Q62318 Psmb9-204ENSMUST00000174576 1351 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim28Q62318 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim28Q62318 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Trim28Q62318 Slfn2-201ENSMUST00000038038 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim28Q62318 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Trim28Q62318 Tpbg-202ENSMUST00000098500 3481 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim28Q62318 Thap12-201ENSMUST00000033009 3723 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim28Q62318 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Trim28Q62318 Llgl1-201ENSMUST00000052346 4303 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim28Q62318 Cpsf4l-203ENSMUST00000106617 1123 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Trim28Q62318 Timm10b-202ENSMUST00000106780 671 ntAPPRIS P2 TSL 2 BASIC17.9■□□□□ 0.46
Trim28Q62318 Nmi-205ENSMUST00000145481 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim28Q62318 Gm45784-201ENSMUST00000188360 142 ntBASIC17.9■□□□□ 0.46
Trim28Q62318 Gm31728-201ENSMUST00000192164 435 ntTSL 3 BASIC17.9■□□□□ 0.46
Trim28Q62318 1600017P15Rik-202ENSMUST00000193960 890 ntBASIC17.9■□□□□ 0.46
Trim28Q62318 Il31-203ENSMUST00000198901 984 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Trim28Q62318 Gm5149-201ENSMUST00000199768 620 ntTSL 3 BASIC17.9■□□□□ 0.46
Trim28Q62318 Gm34549-203ENSMUST00000208300 896 ntTSL 5 BASIC17.9■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 30.1 ms