Protein–RNA interactions for Protein: Q60649

Clpb, Caseinolytic peptidase B protein homolog, mousemouse

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ClpbQ60649 S100a13-201ENSMUST00000048138 715 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
ClpbQ60649 Haus1-201ENSMUST00000048192 1004 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
ClpbQ60649 Hes5-201ENSMUST00000049621 1273 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
ClpbQ60649 Fam192a-201ENSMUST00000034226 2873 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
ClpbQ60649 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC13.38□□□□□ -0.27
ClpbQ60649 E130317F20Rik-202ENSMUST00000217802 3420 ntBASIC13.38□□□□□ -0.27
ClpbQ60649 Hnrnpm-202ENSMUST00000114385 2550 ntTSL 2 BASIC13.38□□□□□ -0.27
ClpbQ60649 Tsn-201ENSMUST00000027623 7063 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
ClpbQ60649 Hmgb3-201ENSMUST00000015361 1544 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
ClpbQ60649 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
ClpbQ60649 Lancl1-202ENSMUST00000113979 4461 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
ClpbQ60649 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
ClpbQ60649 Gm30238-201ENSMUST00000195528 2603 ntBASIC13.38□□□□□ -0.27
ClpbQ60649 Slc16a13-201ENSMUST00000060010 2531 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
ClpbQ60649 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
ClpbQ60649 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
ClpbQ60649 Arf2-201ENSMUST00000057921 2242 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
ClpbQ60649 Slc9a3r2-202ENSMUST00000019684 1688 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
ClpbQ60649 Brsk2-204ENSMUST00000105989 2149 ntAPPRIS P4 TSL 5 BASIC13.37□□□□□ -0.27
ClpbQ60649 Cgn-201ENSMUST00000107272 4963 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
ClpbQ60649 Ntn4-201ENSMUST00000020204 3646 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
ClpbQ60649 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
ClpbQ60649 Psmd8-202ENSMUST00000182328 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
ClpbQ60649 Zfp57-211ENSMUST00000174524 1747 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
ClpbQ60649 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
ClpbQ60649 Pex11g-202ENSMUST00000111081 666 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
ClpbQ60649 Ndufc2-201ENSMUST00000032882 683 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
ClpbQ60649 Gstp2-201ENSMUST00000042700 770 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
ClpbQ60649 Hist1h3f-201ENSMUST00000075558 1261 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
ClpbQ60649 Mrps35-201ENSMUST00000036111 4162 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
ClpbQ60649 Dnase1l1-201ENSMUST00000019232 1625 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
ClpbQ60649 Pdlim3-201ENSMUST00000034053 1604 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
ClpbQ60649 Spock2-201ENSMUST00000121820 5238 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
ClpbQ60649 Nos1ap-202ENSMUST00000160456 3022 ntAPPRIS P2 TSL 5 BASIC13.37□□□□□ -0.27
ClpbQ60649 Ikzf5-202ENSMUST00000121033 2231 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
ClpbQ60649 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
ClpbQ60649 Pdgfrl-201ENSMUST00000034004 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
ClpbQ60649 Wdr70-201ENSMUST00000045766 2126 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
ClpbQ60649 Slfn2-201ENSMUST00000038038 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
ClpbQ60649 Rnf10-203ENSMUST00000112097 3476 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
ClpbQ60649 Folr1-204ENSMUST00000106985 1313 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
ClpbQ60649 4632404H12Rik-201ENSMUST00000038450 2791 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
ClpbQ60649 Rcan1-201ENSMUST00000023672 2192 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
ClpbQ60649 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC13.36□□□□□ -0.27
ClpbQ60649 A230077H06Rik-201ENSMUST00000188579 2918 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
ClpbQ60649 Il17re-202ENSMUST00000058548 2940 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
ClpbQ60649 Slc41a3-201ENSMUST00000032177 2324 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
ClpbQ60649 Camk2d-206ENSMUST00000106402 4180 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
ClpbQ60649 Chp2-201ENSMUST00000033152 1456 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
ClpbQ60649 Ntf3-201ENSMUST00000050484 1483 ntAPPRIS P3 TSL 2 BASIC13.36□□□□□ -0.27
ClpbQ60649 Gm17029-202ENSMUST00000146124 2899 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
ClpbQ60649 Ppp1r12b-209ENSMUST00000168381 3621 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
ClpbQ60649 Rad17-202ENSMUST00000177848 2392 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
ClpbQ60649 Rplp0-201ENSMUST00000086519 1358 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
ClpbQ60649 Satb2-201ENSMUST00000042857 6277 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
ClpbQ60649 Gm5320-201ENSMUST00000207163 1519 ntBASIC13.36□□□□□ -0.27
ClpbQ60649 Diablo-202ENSMUST00000111586 719 ntTSL 5 BASIC13.36□□□□□ -0.27
ClpbQ60649 Rhox2d-201ENSMUST00000115179 685 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
ClpbQ60649 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC13.36□□□□□ -0.27
ClpbQ60649 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC13.36□□□□□ -0.27
ClpbQ60649 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC13.36□□□□□ -0.27
ClpbQ60649 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC13.36□□□□□ -0.27
ClpbQ60649 1700110K17Rik-202ENSMUST00000156511 927 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
ClpbQ60649 Gm16091-201ENSMUST00000156664 963 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
ClpbQ60649 Gstt1-201ENSMUST00000001713 1037 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
ClpbQ60649 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC13.36□□□□□ -0.27
ClpbQ60649 Mir6977-201ENSMUST00000184960 64 ntBASIC13.36□□□□□ -0.27
ClpbQ60649 Gm27321-201ENSMUST00000185021 205 ntBASIC13.36□□□□□ -0.27
ClpbQ60649 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
ClpbQ60649 Sar1b-201ENSMUST00000020653 1201 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
ClpbQ60649 Gm46209-201ENSMUST00000217912 553 ntBASIC13.36□□□□□ -0.27
ClpbQ60649 Gm9063-201ENSMUST00000223299 582 ntBASIC13.36□□□□□ -0.27
ClpbQ60649 Diablo-201ENSMUST00000031385 681 ntTSL 2 BASIC13.36□□□□□ -0.27
ClpbQ60649 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
ClpbQ60649 Gm42769-201ENSMUST00000198576 1659 ntBASIC13.36□□□□□ -0.27
ClpbQ60649 Fahd1-201ENSMUST00000049642 1407 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
ClpbQ60649 Kcna5-201ENSMUST00000060972 2862 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
ClpbQ60649 Gm45751-201ENSMUST00000210185 1573 ntBASIC13.36□□□□□ -0.27
ClpbQ60649 Ntrk2-209ENSMUST00000225950 2640 ntBASIC13.36□□□□□ -0.27
ClpbQ60649 Tmem220-201ENSMUST00000061786 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
ClpbQ60649 Macrod2-204ENSMUST00000110062 3554 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
ClpbQ60649 Mme-206ENSMUST00000194150 3345 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
ClpbQ60649 Lrp8os2-204ENSMUST00000188737 3078 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
ClpbQ60649 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
ClpbQ60649 AC121801.1-201ENSMUST00000225363 1899 ntBASIC13.36□□□□□ -0.27
ClpbQ60649 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
ClpbQ60649 Slc4a1ap-201ENSMUST00000114533 2424 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
ClpbQ60649 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
ClpbQ60649 Tfe3-211ENSMUST00000137467 3390 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
ClpbQ60649 Lrrc8d-201ENSMUST00000060531 3923 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
ClpbQ60649 Emc7-201ENSMUST00000069747 5826 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
ClpbQ60649 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
ClpbQ60649 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
ClpbQ60649 Hadh-201ENSMUST00000029610 1789 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
ClpbQ60649 Tmem97-201ENSMUST00000103242 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
ClpbQ60649 Ubxn4-201ENSMUST00000027592 4113 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
ClpbQ60649 Gm5763-201ENSMUST00000155951 1530 ntBASIC13.35□□□□□ -0.27
ClpbQ60649 Dnaaf5-201ENSMUST00000026975 3450 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
ClpbQ60649 Ylpm1-207ENSMUST00000168977 4893 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
ClpbQ60649 Gm8334-201ENSMUST00000112755 1662 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 32 ms