Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Pmf1-201ENSMUST00000056370 1007 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col28a1Q2UY11 Asb3-206ENSMUST00000203878 1813 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
Col28a1Q2UY11 Acin1-216ENSMUST00000141453 2381 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Col28a1Q2UY11 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col28a1Q2UY11 Tmem169-201ENSMUST00000027380 2928 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col28a1Q2UY11 Plch2-210ENSMUST00000176194 5619 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
Col28a1Q2UY11 Gm13332-201ENSMUST00000120451 1398 ntBASIC13.54□□□□□ -0.24
Col28a1Q2UY11 Rdh10-201ENSMUST00000027053 3587 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col28a1Q2UY11 Tpd52-203ENSMUST00000091355 3081 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Col28a1Q2UY11 Ssc5d-201ENSMUST00000057612 4348 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col28a1Q2UY11 Tnip2-201ENSMUST00000030991 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col28a1Q2UY11 Plcd1-203ENSMUST00000214470 2706 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Col28a1Q2UY11 Rubcn-204ENSMUST00000119810 3371 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
Col28a1Q2UY11 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col28a1Q2UY11 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Col28a1Q2UY11 Pla2g5-204ENSMUST00000102513 2289 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
Col28a1Q2UY11 Hk3-208ENSMUST00000153665 2945 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Col28a1Q2UY11 R3hdm2-212ENSMUST00000166820 4281 ntAPPRIS P2 TSL 5 BASIC13.53□□□□□ -0.24
Col28a1Q2UY11 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col28a1Q2UY11 Mta2-201ENSMUST00000096240 3135 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col28a1Q2UY11 Dlg4-201ENSMUST00000018700 3204 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col28a1Q2UY11 Thap2-202ENSMUST00000218842 4970 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col28a1Q2UY11 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
Col28a1Q2UY11 Tmem163-205ENSMUST00000185560 3488 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col28a1Q2UY11 AC126549.2-201ENSMUST00000223997 1976 ntBASIC13.53□□□□□ -0.24
Col28a1Q2UY11 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col28a1Q2UY11 Sp6-202ENSMUST00000107622 3621 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col28a1Q2UY11 Gm12020-201ENSMUST00000119030 2042 ntBASIC13.53□□□□□ -0.24
Col28a1Q2UY11 Gm43796-201ENSMUST00000202853 2012 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
Col28a1Q2UY11 Mrpl55-204ENSMUST00000108786 757 ntTSL 2 BASIC13.53□□□□□ -0.24
Col28a1Q2UY11 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC13.53□□□□□ -0.24
Col28a1Q2UY11 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Col28a1Q2UY11 Gm16026-204ENSMUST00000162652 683 ntBASIC13.53□□□□□ -0.24
Col28a1Q2UY11 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC13.53□□□□□ -0.24
Col28a1Q2UY11 Gm5177-201ENSMUST00000183092 997 ntBASIC13.53□□□□□ -0.24
Col28a1Q2UY11 Pbx2-205ENSMUST00000183827 1186 ntTSL 5 BASIC13.53□□□□□ -0.24
Col28a1Q2UY11 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC13.53□□□□□ -0.24
Col28a1Q2UY11 Gm20949-201ENSMUST00000206478 952 ntBASIC13.53□□□□□ -0.24
Col28a1Q2UY11 Gm45098-201ENSMUST00000207179 657 ntBASIC13.53□□□□□ -0.24
Col28a1Q2UY11 AC131690.1-201ENSMUST00000218406 374 ntBASIC13.53□□□□□ -0.24
Col28a1Q2UY11 Smdt1-201ENSMUST00000023086 705 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col28a1Q2UY11 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col28a1Q2UY11 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
Col28a1Q2UY11 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col28a1Q2UY11 Tmub2-205ENSMUST00000156326 2249 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col28a1Q2UY11 Map7d1-202ENSMUST00000106132 3195 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
Col28a1Q2UY11 Cad-206ENSMUST00000201838 3153 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Col28a1Q2UY11 Tmprss11d-202ENSMUST00000122377 2256 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Col28a1Q2UY11 Gm37644-201ENSMUST00000192190 2270 ntBASIC13.53□□□□□ -0.24
Col28a1Q2UY11 Pcdh7-203ENSMUST00000191837 8785 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col28a1Q2UY11 Pdpk1-204ENSMUST00000115409 4623 ntTSL 5 BASIC13.53□□□□□ -0.24
Col28a1Q2UY11 Ablim1-202ENSMUST00000099294 6232 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Col28a1Q2UY11 1700065D16Rik-205ENSMUST00000190890 2903 ntBASIC13.53□□□□□ -0.24
Col28a1Q2UY11 Yap1-202ENSMUST00000086580 4115 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col28a1Q2UY11 Nrn1-204ENSMUST00000224323 1779 ntBASIC13.53□□□□□ -0.24
Col28a1Q2UY11 Rnf167-201ENSMUST00000037534 1833 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col28a1Q2UY11 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
Col28a1Q2UY11 Gm14752-201ENSMUST00000120719 2075 ntBASIC13.52□□□□□ -0.24
Col28a1Q2UY11 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Col28a1Q2UY11 Slc4a5-201ENSMUST00000039212 5123 ntAPPRIS P2 TSL 5 BASIC13.52□□□□□ -0.24
Col28a1Q2UY11 Arl6ip6-201ENSMUST00000028336 2548 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Col28a1Q2UY11 Cd34-202ENSMUST00000110815 2554 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
Col28a1Q2UY11 Kansl3-205ENSMUST00000186470 2801 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
Col28a1Q2UY11 Ctbs-202ENSMUST00000061937 2892 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
Col28a1Q2UY11 Ifna12-201ENSMUST00000102806 797 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
Col28a1Q2UY11 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC13.52□□□□□ -0.25
Col28a1Q2UY11 Gm6226-201ENSMUST00000117765 1146 ntBASIC13.52□□□□□ -0.25
Col28a1Q2UY11 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC13.52□□□□□ -0.25
Col28a1Q2UY11 Pfn2-203ENSMUST00000120289 905 ntTSL 2 BASIC13.52□□□□□ -0.25
Col28a1Q2UY11 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Col28a1Q2UY11 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
Col28a1Q2UY11 Gm10275-202ENSMUST00000168697 495 ntBASIC13.52□□□□□ -0.25
Col28a1Q2UY11 Cebpzos-202ENSMUST00000180077 602 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Col28a1Q2UY11 Gm27301-201ENSMUST00000184012 127 ntBASIC13.52□□□□□ -0.25
Col28a1Q2UY11 Gm45612-201ENSMUST00000211320 160 ntBASIC13.52□□□□□ -0.25
Col28a1Q2UY11 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Col28a1Q2UY11 Obp2a-201ENSMUST00000077667 744 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Col28a1Q2UY11 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
Col28a1Q2UY11 Gm10275-201ENSMUST00000092620 635 ntBASIC13.52□□□□□ -0.25
Col28a1Q2UY11 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC13.52□□□□□ -0.25
Col28a1Q2UY11 Gcfc2-201ENSMUST00000043195 4192 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Col28a1Q2UY11 Rps6kb2-202ENSMUST00000118483 1409 ntTSL 5 BASIC13.52□□□□□ -0.25
Col28a1Q2UY11 Gk5-202ENSMUST00000122383 4455 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Col28a1Q2UY11 Lrr1-201ENSMUST00000110621 1500 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Col28a1Q2UY11 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Col28a1Q2UY11 Miat-205ENSMUST00000182953 9163 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Col28a1Q2UY11 Gm26576-201ENSMUST00000181018 1977 ntTSL 5 BASIC13.52□□□□□ -0.25
Col28a1Q2UY11 Serpinb2-201ENSMUST00000009356 1970 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Col28a1Q2UY11 Trim34a-202ENSMUST00000106848 2043 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Col28a1Q2UY11 Jazf1-201ENSMUST00000074541 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Col28a1Q2UY11 Specc1-202ENSMUST00000092415 6797 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
Col28a1Q2UY11 Ermard-203ENSMUST00000097393 2535 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
Col28a1Q2UY11 Ccdc8-201ENSMUST00000094805 4809 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
Col28a1Q2UY11 Tle3-204ENSMUST00000159386 4527 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
Col28a1Q2UY11 Grin1-203ENSMUST00000114308 4165 ntTSL 5 BASIC13.51□□□□□ -0.25
Col28a1Q2UY11 Nol9-201ENSMUST00000084116 3722 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col28a1Q2UY11 Olfm1-202ENSMUST00000100244 2686 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Col28a1Q2UY11 Hnrnph1-203ENSMUST00000109142 2427 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col28a1Q2UY11 Abcg8-202ENSMUST00000170725 2415 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Col28a1Q2UY11 Armcx1-203ENSMUST00000113197 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 25.3 ms