Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Chdh-201ENSMUST00000067620 5690 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdx2P43241 Adam11-201ENSMUST00000068150 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdx2P43241 1500009C09Rik-202ENSMUST00000143238 1552 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdx2P43241 Trp73-201ENSMUST00000097762 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdx2P43241 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdx2P43241 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdx2P43241 Kmt5c-203ENSMUST00000108583 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdx2P43241 Decr2-201ENSMUST00000040907 2187 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdx2P43241 Wfdc9-202ENSMUST00000109335 547 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Cdx2P43241 Rhox2f-201ENSMUST00000115173 799 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Cdx2P43241 Gm8213-201ENSMUST00000118191 441 ntBASIC13.16□□□□□ -0.3
Cdx2P43241 Cdk4-202ENSMUST00000120226 714 ntTSL 5 BASIC13.16□□□□□ -0.3
Cdx2P43241 Gm10156-201ENSMUST00000122364 462 ntBASIC13.16□□□□□ -0.3
Cdx2P43241 Hypk-204ENSMUST00000126764 961 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdx2P43241 Dnase2a-206ENSMUST00000145292 678 ntTSL 5 BASIC13.16□□□□□ -0.3
Cdx2P43241 Nmi-205ENSMUST00000145481 1162 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdx2P43241 Armc2-208ENSMUST00000162405 1135 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Cdx2P43241 Gm19184-201ENSMUST00000196798 928 ntBASIC13.16□□□□□ -0.3
Cdx2P43241 AC154276.1-201ENSMUST00000228874 1299 ntBASIC13.16□□□□□ -0.3
Cdx2P43241 Gm9823-201ENSMUST00000051212 327 ntBASIC13.16□□□□□ -0.3
Cdx2P43241 Olfr222-201ENSMUST00000071943 1115 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
Cdx2P43241 Mdk-203ENSMUST00000090602 714 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Cdx2P43241 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC13.16□□□□□ -0.3
Cdx2P43241 Syngr2-201ENSMUST00000026649 1520 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdx2P43241 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdx2P43241 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Cdx2P43241 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC13.16□□□□□ -0.3
Cdx2P43241 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdx2P43241 Ppp2r5b-201ENSMUST00000025695 2742 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdx2P43241 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Cdx2P43241 Trip4-201ENSMUST00000117083 1999 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdx2P43241 Fam118b-203ENSMUST00000121564 1962 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdx2P43241 AC126549.2-201ENSMUST00000223997 1976 ntBASIC13.16□□□□□ -0.3
Cdx2P43241 Rtf1-201ENSMUST00000028767 4664 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdx2P43241 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdx2P43241 Rb1cc1-201ENSMUST00000027040 7607 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Cdx2P43241 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Cdx2P43241 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Cdx2P43241 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Cdx2P43241 H2-DMb2-201ENSMUST00000041982 1347 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Cdx2P43241 Gm10339-203ENSMUST00000225409 1671 ntBASIC13.15□□□□□ -0.3
Cdx2P43241 Cep44-201ENSMUST00000040330 1690 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Cdx2P43241 Prkab2-201ENSMUST00000045743 5006 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Cdx2P43241 Rgl1-203ENSMUST00000111859 5092 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Cdx2P43241 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Cdx2P43241 Adora2a-201ENSMUST00000105420 2596 ntAPPRIS P1 TSL 3 BASIC13.15□□□□□ -0.3
Cdx2P43241 Cd63-202ENSMUST00000105229 1043 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Cdx2P43241 Mkl2-203ENSMUST00000115809 667 ntTSL 2 BASIC13.15□□□□□ -0.3
Cdx2P43241 Spdye4b-202ENSMUST00000159781 1128 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Cdx2P43241 Gm17180-201ENSMUST00000172211 435 ntTSL 3 BASIC13.15□□□□□ -0.3
Cdx2P43241 Gm28380-201ENSMUST00000188800 385 ntTSL 5 BASIC13.15□□□□□ -0.3
Cdx2P43241 Gm39318-201ENSMUST00000214606 1118 ntTSL 3 BASIC13.15□□□□□ -0.3
Cdx2P43241 Cd63-204ENSMUST00000219317 1109 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Cdx2P43241 Clps-201ENSMUST00000025062 550 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Cdx2P43241 Upk2-201ENSMUST00000047740 1083 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Cdx2P43241 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Cdx2P43241 Bri3bp-201ENSMUST00000049040 6473 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Cdx2P43241 Usp27x-203ENSMUST00000191497 4273 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
Cdx2P43241 Fmnl2-205ENSMUST00000155586 3939 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Cdx2P43241 Syne3-201ENSMUST00000067005 5097 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Cdx2P43241 Gm26747-201ENSMUST00000180597 1716 ntTSL 5 BASIC13.15□□□□□ -0.3
Cdx2P43241 Mesd-201ENSMUST00000094215 4492 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Cdx2P43241 Nid1-201ENSMUST00000005532 6091 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Cdx2P43241 Gm16534-201ENSMUST00000149300 1492 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Cdx2P43241 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Cdx2P43241 Shpk-201ENSMUST00000006105 2808 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Cdx2P43241 C130080G10Rik-203ENSMUST00000154140 1564 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Cdx2P43241 Zfp36-202ENSMUST00000209061 2465 ntAPPRIS ALT2 BASIC13.15□□□□□ -0.3
Cdx2P43241 Pef1-201ENSMUST00000030563 1551 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Cdx2P43241 Dok7-201ENSMUST00000050709 2498 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Cdx2P43241 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Cdx2P43241 Tcf4-258ENSMUST00000202937 2103 ntTSL 5 BASIC13.15□□□□□ -0.3
Cdx2P43241 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC13.15□□□□□ -0.31
Cdx2P43241 Pias3-203ENSMUST00000107077 2695 ntTSL 1 (best) BASIC13.15□□□□□ -0.31
Cdx2P43241 Sh2d5-202ENSMUST00000105824 3512 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cdx2P43241 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cdx2P43241 Gm28729-201ENSMUST00000190704 1964 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Cdx2P43241 Rnf44-201ENSMUST00000037422 3734 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Cdx2P43241 Rasal3-204ENSMUST00000135618 3293 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Cdx2P43241 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Cdx2P43241 Vps51-204ENSMUST00000159832 3048 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Cdx2P43241 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Cdx2P43241 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Cdx2P43241 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cdx2P43241 Wdr90-201ENSMUST00000079461 5991 ntAPPRIS P2 TSL 5 BASIC13.14□□□□□ -0.31
Cdx2P43241 Usp53-201ENSMUST00000090379 6185 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cdx2P43241 Txn2-202ENSMUST00000100486 676 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Cdx2P43241 Gm12203-201ENSMUST00000118235 598 ntBASIC13.14□□□□□ -0.31
Cdx2P43241 Gm12209-201ENSMUST00000120089 596 ntBASIC13.14□□□□□ -0.31
Cdx2P43241 Gm12329-201ENSMUST00000120829 1007 ntBASIC13.14□□□□□ -0.31
Cdx2P43241 Gm1335-201ENSMUST00000121653 386 ntBASIC13.14□□□□□ -0.31
Cdx2P43241 4930412M03Rik-201ENSMUST00000130746 1111 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Cdx2P43241 1700061E18Rik-201ENSMUST00000154159 588 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Cdx2P43241 Dnm3os-203ENSMUST00000185878 557 ntTSL 5 BASIC13.14□□□□□ -0.31
Cdx2P43241 Dnd1-ps-201ENSMUST00000196992 964 ntBASIC13.14□□□□□ -0.31
Cdx2P43241 Chfr-212ENSMUST00000200038 606 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Cdx2P43241 Tcf4-248ENSMUST00000202354 2120 ntTSL 5 BASIC13.14□□□□□ -0.31
Cdx2P43241 Tcf4-257ENSMUST00000202772 2125 ntTSL 5 BASIC13.14□□□□□ -0.31
Cdx2P43241 Gm45892-201ENSMUST00000212627 273 ntTSL 5 BASIC13.14□□□□□ -0.31
Cdx2P43241 Gm19309-201ENSMUST00000218295 205 ntBASIC13.14□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 40.4 ms