Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Taok2-201ENSMUST00000071268 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sh3rf1Q69ZI1 Gm43156-201ENSMUST00000202338 2127 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Sh3rf1Q69ZI1 Eif4ebp2-201ENSMUST00000020288 5784 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sh3rf1Q69ZI1 Spsb1-203ENSMUST00000105685 1537 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sh3rf1Q69ZI1 Abtb2-201ENSMUST00000076212 4558 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sh3rf1Q69ZI1 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
Sh3rf1Q69ZI1 Hist1h4n-201ENSMUST00000102979 430 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Sh3rf1Q69ZI1 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Sh3rf1Q69ZI1 Gm14042-201ENSMUST00000120139 833 ntBASIC14.17□□□□□ -0.14
Sh3rf1Q69ZI1 Vps53-204ENSMUST00000129256 650 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Sh3rf1Q69ZI1 Gm16026-204ENSMUST00000162652 683 ntBASIC14.17□□□□□ -0.14
Sh3rf1Q69ZI1 Gm26935-201ENSMUST00000182686 519 ntTSL 5 BASIC14.17□□□□□ -0.14
Sh3rf1Q69ZI1 Bpnt1-205ENSMUST00000210277 1226 ntTSL 5 BASIC14.17□□□□□ -0.14
Sh3rf1Q69ZI1 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC14.17□□□□□ -0.14
Sh3rf1Q69ZI1 Adgrg3-201ENSMUST00000051259 2439 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sh3rf1Q69ZI1 Bag6-203ENSMUST00000172571 3599 ntTSL 5 BASIC14.17□□□□□ -0.14
Sh3rf1Q69ZI1 Axdnd1-204ENSMUST00000178036 3586 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Sh3rf1Q69ZI1 Otub1-201ENSMUST00000025679 1713 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sh3rf1Q69ZI1 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Sh3rf1Q69ZI1 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sh3rf1Q69ZI1 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sh3rf1Q69ZI1 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sh3rf1Q69ZI1 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Sh3rf1Q69ZI1 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sh3rf1Q69ZI1 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Sh3rf1Q69ZI1 Zbtb25-204ENSMUST00000176278 1672 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sh3rf1Q69ZI1 Slc8b1-204ENSMUST00000111890 2775 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Sh3rf1Q69ZI1 Folr1-204ENSMUST00000106985 1313 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Sh3rf1Q69ZI1 Aifm2-202ENSMUST00000080099 1329 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Sh3rf1Q69ZI1 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Sh3rf1Q69ZI1 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sh3rf1Q69ZI1 Parp16-202ENSMUST00000213396 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sh3rf1Q69ZI1 Gm17619-201ENSMUST00000180625 1449 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Sh3rf1Q69ZI1 Mrps9-201ENSMUST00000057208 1418 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sh3rf1Q69ZI1 Rbm47-206ENSMUST00000200775 3180 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sh3rf1Q69ZI1 Esm1-201ENSMUST00000038144 2097 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sh3rf1Q69ZI1 Pear1-205ENSMUST00000172621 4490 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sh3rf1Q69ZI1 Vav1-203ENSMUST00000112870 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sh3rf1Q69ZI1 Disp2-202ENSMUST00000063975 1505 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Sh3rf1Q69ZI1 Col4a1-201ENSMUST00000033898 6615 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sh3rf1Q69ZI1 Dmrtc2-201ENSMUST00000011493 1619 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sh3rf1Q69ZI1 Gm6159-201ENSMUST00000191249 1724 ntBASIC14.16□□□□□ -0.14
Sh3rf1Q69ZI1 Gm4297-201ENSMUST00000119285 2579 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Sh3rf1Q69ZI1 Fstl5-201ENSMUST00000038364 5107 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sh3rf1Q69ZI1 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Sh3rf1Q69ZI1 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC14.16□□□□□ -0.14
Sh3rf1Q69ZI1 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC14.16□□□□□ -0.14
Sh3rf1Q69ZI1 Gm15483-201ENSMUST00000120338 456 ntBASIC14.16□□□□□ -0.14
Sh3rf1Q69ZI1 Gm13883-202ENSMUST00000151310 1156 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Sh3rf1Q69ZI1 Cystm1-205ENSMUST00000152804 445 ntAPPRIS P2 TSL 3 BASIC14.16□□□□□ -0.14
Sh3rf1Q69ZI1 Gm26771-201ENSMUST00000180472 1082 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Sh3rf1Q69ZI1 Gm37277-201ENSMUST00000194052 1111 ntBASIC14.16□□□□□ -0.14
Sh3rf1Q69ZI1 Gm8239-201ENSMUST00000204094 444 ntTSL 2 BASIC14.16□□□□□ -0.14
Sh3rf1Q69ZI1 B9d2-203ENSMUST00000205658 995 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sh3rf1Q69ZI1 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sh3rf1Q69ZI1 4930593C16Rik-202ENSMUST00000214011 714 ntTSL 5 BASIC14.16□□□□□ -0.14
Sh3rf1Q69ZI1 CT025535.1-201ENSMUST00000227172 491 ntBASIC14.16□□□□□ -0.14
Sh3rf1Q69ZI1 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sh3rf1Q69ZI1 Lce1g-201ENSMUST00000029527 925 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sh3rf1Q69ZI1 Spsb2-201ENSMUST00000047760 1213 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sh3rf1Q69ZI1 Gm5771-201ENSMUST00000049079 798 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sh3rf1Q69ZI1 Iqcf3-201ENSMUST00000062917 1131 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sh3rf1Q69ZI1 Gm6594-201ENSMUST00000097278 288 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Sh3rf1Q69ZI1 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sh3rf1Q69ZI1 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC14.16□□□□□ -0.14
Sh3rf1Q69ZI1 Mfsd4a-205ENSMUST00000144548 3288 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Sh3rf1Q69ZI1 Nr2f2-201ENSMUST00000032768 4222 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sh3rf1Q69ZI1 Spata21-201ENSMUST00000051907 2526 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sh3rf1Q69ZI1 Nfatc1-202ENSMUST00000078049 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sh3rf1Q69ZI1 Pkp3-202ENSMUST00000106039 2919 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sh3rf1Q69ZI1 Map3k20-201ENSMUST00000090824 3334 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sh3rf1Q69ZI1 Slc52a3-202ENSMUST00000109858 2094 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Sh3rf1Q69ZI1 Pnoc-201ENSMUST00000059339 2157 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sh3rf1Q69ZI1 Gm37644-201ENSMUST00000192190 2270 ntBASIC14.16□□□□□ -0.14
Sh3rf1Q69ZI1 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sh3rf1Q69ZI1 2810408A11Rik-202ENSMUST00000100969 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sh3rf1Q69ZI1 Crhr2-209ENSMUST00000213026 1443 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sh3rf1Q69ZI1 Slc34a1-201ENSMUST00000057167 2433 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sh3rf1Q69ZI1 Tmem51os1-204ENSMUST00000153023 3440 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Sh3rf1Q69ZI1 Dpp6-201ENSMUST00000071500 3826 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sh3rf1Q69ZI1 Cd34-202ENSMUST00000110815 2554 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Sh3rf1Q69ZI1 Rxra-203ENSMUST00000113934 1989 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Sh3rf1Q69ZI1 Diablo-202ENSMUST00000111586 719 ntTSL 5 BASIC14.15□□□□□ -0.14
Sh3rf1Q69ZI1 Gm2810-201ENSMUST00000118681 990 ntBASIC14.15□□□□□ -0.14
Sh3rf1Q69ZI1 Gm12428-201ENSMUST00000119844 727 ntBASIC14.15□□□□□ -0.14
Sh3rf1Q69ZI1 Ncr3-ps-201ENSMUST00000134687 525 ntBASIC14.15□□□□□ -0.14
Sh3rf1Q69ZI1 1700021F05Rik-202ENSMUST00000147196 860 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sh3rf1Q69ZI1 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Sh3rf1Q69ZI1 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC14.15□□□□□ -0.14
Sh3rf1Q69ZI1 Hrasls5-201ENSMUST00000025929 1063 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sh3rf1Q69ZI1 Diablo-201ENSMUST00000031385 681 ntTSL 2 BASIC14.15□□□□□ -0.14
Sh3rf1Q69ZI1 Nfxl1-202ENSMUST00000087216 3712 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Sh3rf1Q69ZI1 Arid4b-203ENSMUST00000110534 5864 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sh3rf1Q69ZI1 Zfp334-201ENSMUST00000103084 8205 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sh3rf1Q69ZI1 Rbbp7-201ENSMUST00000033720 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sh3rf1Q69ZI1 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC14.15□□□□□ -0.14
Sh3rf1Q69ZI1 G3bp2-203ENSMUST00000167918 4232 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sh3rf1Q69ZI1 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sh3rf1Q69ZI1 Gm9252-201ENSMUST00000172364 1602 ntBASIC14.15□□□□□ -0.14
Sh3rf1Q69ZI1 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 11.6 ms