Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Tpk1-201ENSMUST00000067888 2671 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col28a1Q2UY11 Gm37133-201ENSMUST00000192705 1922 ntBASIC13.56□□□□□ -0.24
Col28a1Q2UY11 Nkain3-202ENSMUST00000119374 4567 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col28a1Q2UY11 Nkx6-3-201ENSMUST00000071588 2238 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col28a1Q2UY11 Ppp3cb-205ENSMUST00000161445 3298 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col28a1Q2UY11 Tnk2-201ENSMUST00000115120 2794 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Col28a1Q2UY11 Trim45-203ENSMUST00000106980 3337 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col28a1Q2UY11 Sbk1-201ENSMUST00000056028 4109 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col28a1Q2UY11 B3galnt2-201ENSMUST00000099747 3892 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col28a1Q2UY11 Fam155a-201ENSMUST00000110969 3388 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col28a1Q2UY11 Hif1a-201ENSMUST00000021530 4724 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col28a1Q2UY11 Lrig2-205ENSMUST00000198332 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col28a1Q2UY11 Slc52a3-202ENSMUST00000109858 2094 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Col28a1Q2UY11 Hspa4-201ENSMUST00000020630 4618 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col28a1Q2UY11 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col28a1Q2UY11 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Col28a1Q2UY11 Gm12892-201ENSMUST00000117367 1146 ntBASIC13.56□□□□□ -0.24
Col28a1Q2UY11 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC13.56□□□□□ -0.24
Col28a1Q2UY11 Ccnh-202ENSMUST00000163600 1055 ntTSL 5 BASIC13.56□□□□□ -0.24
Col28a1Q2UY11 Olfr1344-201ENSMUST00000168341 1061 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
Col28a1Q2UY11 Gm44335-201ENSMUST00000196879 141 ntBASIC13.56□□□□□ -0.24
Col28a1Q2UY11 Gm44297-201ENSMUST00000198304 141 ntBASIC13.56□□□□□ -0.24
Col28a1Q2UY11 Gm44346-201ENSMUST00000198851 141 ntBASIC13.56□□□□□ -0.24
Col28a1Q2UY11 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Col28a1Q2UY11 Ldlrad3-201ENSMUST00000058790 3833 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col28a1Q2UY11 Npc2-201ENSMUST00000021668 3299 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col28a1Q2UY11 Dzip1-202ENSMUST00000047208 4476 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
Col28a1Q2UY11 St13-205ENSMUST00000172107 3346 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col28a1Q2UY11 Sema4b-201ENSMUST00000032754 3949 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col28a1Q2UY11 D930019O06Rik-201ENSMUST00000181841 3663 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Col28a1Q2UY11 Abcg4-208ENSMUST00000161354 3999 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col28a1Q2UY11 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col28a1Q2UY11 Cacna1g-203ENSMUST00000103166 8104 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
Col28a1Q2UY11 Gm28551-201ENSMUST00000144660 3142 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col28a1Q2UY11 Slc35c2-202ENSMUST00000109298 1991 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col28a1Q2UY11 AW822073-202ENSMUST00000204003 1959 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
Col28a1Q2UY11 Gm15816-201ENSMUST00000141930 1688 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Col28a1Q2UY11 Ackr4-204ENSMUST00000219146 1654 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
Col28a1Q2UY11 Pgm5-201ENSMUST00000047666 3239 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col28a1Q2UY11 Oser1-202ENSMUST00000104954 1702 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col28a1Q2UY11 Gm26604-201ENSMUST00000180926 1766 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Col28a1Q2UY11 Adgrg3-201ENSMUST00000051259 2439 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col28a1Q2UY11 Hspa12b-201ENSMUST00000099349 3413 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col28a1Q2UY11 Pfkfb3-212ENSMUST00000170196 2163 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Col28a1Q2UY11 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Col28a1Q2UY11 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC13.55□□□□□ -0.24
Col28a1Q2UY11 Samd4b-204ENSMUST00000208199 4391 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
Col28a1Q2UY11 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col28a1Q2UY11 BC003965-201ENSMUST00000088307 3022 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
Col28a1Q2UY11 Itga6-202ENSMUST00000112101 4156 ntAPPRIS ALT1 TSL 5 BASIC13.55□□□□□ -0.24
Col28a1Q2UY11 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Col28a1Q2UY11 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Col28a1Q2UY11 Gm13365-201ENSMUST00000121188 973 ntBASIC13.55□□□□□ -0.24
Col28a1Q2UY11 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Col28a1Q2UY11 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
Col28a1Q2UY11 Zdhhc23-202ENSMUST00000165648 1278 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col28a1Q2UY11 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Col28a1Q2UY11 Gm5312-201ENSMUST00000203728 547 ntBASIC13.55□□□□□ -0.24
Col28a1Q2UY11 Rpl28-201ENSMUST00000032597 1106 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col28a1Q2UY11 Cenpo-201ENSMUST00000020981 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col28a1Q2UY11 Cct4-204ENSMUST00000173867 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col28a1Q2UY11 Nup88-201ENSMUST00000035283 2450 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Col28a1Q2UY11 Zbtb39-201ENSMUST00000054287 5960 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col28a1Q2UY11 Irs1-201ENSMUST00000069799 9144 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col28a1Q2UY11 Pkp3-202ENSMUST00000106039 2919 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col28a1Q2UY11 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
Col28a1Q2UY11 Grm5-204ENSMUST00000155358 4500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col28a1Q2UY11 Fam110b-209ENSMUST00000171403 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col28a1Q2UY11 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col28a1Q2UY11 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col28a1Q2UY11 2610507B11Rik-201ENSMUST00000010421 7443 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col28a1Q2UY11 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Col28a1Q2UY11 Wrap53-201ENSMUST00000048139 1891 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col28a1Q2UY11 Stau2-215ENSMUST00000162435 2735 ntTSL 5 BASIC13.55□□□□□ -0.24
Col28a1Q2UY11 Kansl2-ps-201ENSMUST00000181818 1461 ntBASIC13.55□□□□□ -0.24
Col28a1Q2UY11 Spred2-202ENSMUST00000093299 4449 ntTSL 5 BASIC13.55□□□□□ -0.24
Col28a1Q2UY11 Ddx23-201ENSMUST00000003450 3187 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
Col28a1Q2UY11 Bhlhb9-204ENSMUST00000180025 2812 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
Col28a1Q2UY11 Radil-204ENSMUST00000110785 3708 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col28a1Q2UY11 Mllt10-203ENSMUST00000114671 5063 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Col28a1Q2UY11 Gm13848-201ENSMUST00000130777 2047 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Col28a1Q2UY11 Fbxo25-201ENSMUST00000043520 2012 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col28a1Q2UY11 Iqcj-201ENSMUST00000063263 1579 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col28a1Q2UY11 Galt-201ENSMUST00000084695 1595 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col28a1Q2UY11 D330025C20Rik-201ENSMUST00000191632 3046 ntBASIC13.54□□□□□ -0.24
Col28a1Q2UY11 Axdnd1-204ENSMUST00000178036 3586 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
Col28a1Q2UY11 Ctbp1-212ENSMUST00000202962 3595 ntTSL 2 BASIC13.54□□□□□ -0.24
Col28a1Q2UY11 Dpp7-201ENSMUST00000028332 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col28a1Q2UY11 Lypd6-201ENSMUST00000053208 3620 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col28a1Q2UY11 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Col28a1Q2UY11 Lpcat1-201ENSMUST00000022099 3675 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col28a1Q2UY11 Ikzf4-201ENSMUST00000133342 5150 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
Col28a1Q2UY11 Pfkl-201ENSMUST00000020522 3730 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col28a1Q2UY11 Armcx1-202ENSMUST00000051256 2253 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col28a1Q2UY11 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC13.54□□□□□ -0.24
Col28a1Q2UY11 Gm15427-201ENSMUST00000117288 531 ntBASIC13.54□□□□□ -0.24
Col28a1Q2UY11 Rpl18-ps1-201ENSMUST00000121555 525 ntBASIC13.54□□□□□ -0.24
Col28a1Q2UY11 Gm14268-201ENSMUST00000132465 682 ntTSL 3 BASIC13.54□□□□□ -0.24
Col28a1Q2UY11 Dusp3-205ENSMUST00000143177 391 ntTSL 3 BASIC13.54□□□□□ -0.24
Col28a1Q2UY11 Gm2272-201ENSMUST00000194903 582 ntBASIC13.54□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 34.9 ms