Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Zbtb46-201ENSMUST00000029106 5309 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Nkx3-1P97436 Sema3b-204ENSMUST00000102531 2958 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Nkx3-1P97436 Gm9109-201ENSMUST00000120254 1405 ntBASIC12.03□□□□□ -0.48
Nkx3-1P97436 Fen1-204ENSMUST00000156291 2373 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
Nkx3-1P97436 Ptprk-201ENSMUST00000166468 6177 ntAPPRIS P2 TSL 2 BASIC12.03□□□□□ -0.48
Nkx3-1P97436 Gm6871-201ENSMUST00000073410 1430 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Nkx3-1P97436 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.48
Nkx3-1P97436 Fdx1-202ENSMUST00000214013 2759 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Nkx3-1P97436 Cald1-201ENSMUST00000031775 2142 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.48
Nkx3-1P97436 Tspan32-205ENSMUST00000105924 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Nkx3-1P97436 Spred2-202ENSMUST00000093299 4449 ntTSL 5 BASIC12.02□□□□□ -0.48
Nkx3-1P97436 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Nkx3-1P97436 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Nkx3-1P97436 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Nkx3-1P97436 Prkacb-202ENSMUST00000102515 4347 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Nkx3-1P97436 Nrxn1-207ENSMUST00000160844 9309 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Nkx3-1P97436 Kif5c-201ENSMUST00000028102 6856 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Nkx3-1P97436 Sgtb-201ENSMUST00000044385 3048 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Nkx3-1P97436 Cdx4-201ENSMUST00000033689 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Nkx3-1P97436 Olfml2a-201ENSMUST00000057279 5579 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Nkx3-1P97436 Gm11557-201ENSMUST00000120200 1008 ntBASIC12.02□□□□□ -0.49
Nkx3-1P97436 Gm13385-201ENSMUST00000121089 220 ntBASIC12.02□□□□□ -0.49
Nkx3-1P97436 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Nkx3-1P97436 Gm14285-201ENSMUST00000146049 380 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Nkx3-1P97436 Mir1938-201ENSMUST00000158746 100 ntBASIC12.02□□□□□ -0.49
Nkx3-1P97436 Gm8927-201ENSMUST00000181978 981 ntBASIC12.02□□□□□ -0.49
Nkx3-1P97436 Gm43630-201ENSMUST00000201550 776 ntBASIC12.02□□□□□ -0.49
Nkx3-1P97436 Gm19078-201ENSMUST00000206311 727 ntBASIC12.02□□□□□ -0.49
Nkx3-1P97436 Gm7067-201ENSMUST00000207698 1249 ntBASIC12.02□□□□□ -0.49
Nkx3-1P97436 AC192088.1-201ENSMUST00000227561 301 ntBASIC12.02□□□□□ -0.49
Nkx3-1P97436 Mrps17-201ENSMUST00000042191 832 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Nkx3-1P97436 Gm3222-201ENSMUST00000071282 990 ntBASIC12.02□□□□□ -0.49
Nkx3-1P97436 Plpp4-201ENSMUST00000094018 1256 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Nkx3-1P97436 Pnma1-201ENSMUST00000061425 2359 ntAPPRIS P1 BASIC12.02□□□□□ -0.49
Nkx3-1P97436 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Nkx3-1P97436 Ap4b1-204ENSMUST00000106824 2412 ntTSL 5 BASIC12.02□□□□□ -0.49
Nkx3-1P97436 Dlk1-205ENSMUST00000109844 1703 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Nkx3-1P97436 Larp4b-202ENSMUST00000188211 5610 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Nkx3-1P97436 Ppt2-210ENSMUST00000171376 1750 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Nkx3-1P97436 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Nkx3-1P97436 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Nkx3-1P97436 4933435F18Rik-202ENSMUST00000154878 2174 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Nkx3-1P97436 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
Nkx3-1P97436 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Nkx3-1P97436 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Nkx3-1P97436 Ttc24-201ENSMUST00000050258 2251 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Nkx3-1P97436 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC12.02□□□□□ -0.49
Nkx3-1P97436 Syt6-203ENSMUST00000118117 1856 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Nkx3-1P97436 Gm20546-201ENSMUST00000173141 1889 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Nkx3-1P97436 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Nkx3-1P97436 Ncor2-203ENSMUST00000111393 8661 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Nkx3-1P97436 Cdr2l-201ENSMUST00000053288 3700 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Nkx3-1P97436 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Nkx3-1P97436 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Nkx3-1P97436 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Nkx3-1P97436 Bmp4-201ENSMUST00000074077 2064 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Nkx3-1P97436 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Nkx3-1P97436 Mbtd1-201ENSMUST00000063645 2138 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Nkx3-1P97436 Slc44a3-201ENSMUST00000039197 2620 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Nkx3-1P97436 Sgce-205ENSMUST00000115579 1696 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Nkx3-1P97436 Rnd1-201ENSMUST00000003451 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Nkx3-1P97436 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Nkx3-1P97436 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Nkx3-1P97436 Plch2-207ENSMUST00000139976 5322 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Nkx3-1P97436 Gm14812-201ENSMUST00000156494 1794 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Nkx3-1P97436 Fbxw17-201ENSMUST00000046974 1798 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Nkx3-1P97436 Selenoh-202ENSMUST00000102647 654 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Nkx3-1P97436 Shf-202ENSMUST00000110530 910 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
Nkx3-1P97436 Gm11524-201ENSMUST00000119349 807 ntBASIC12.01□□□□□ -0.49
Nkx3-1P97436 Gm11592-201ENSMUST00000133160 637 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Nkx3-1P97436 Pmepa1os-201ENSMUST00000150185 680 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Nkx3-1P97436 Rpl13a-201ENSMUST00000150350 1047 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Nkx3-1P97436 Gnb2-215ENSMUST00000170293 993 ntTSL 5 BASIC12.01□□□□□ -0.49
Nkx3-1P97436 Gm3764-203ENSMUST00000180635 1191 ntTSL 5 BASIC12.01□□□□□ -0.49
Nkx3-1P97436 Carmn-202ENSMUST00000182244 988 ntTSL 2 BASIC12.01□□□□□ -0.49
Nkx3-1P97436 Gm20219-201ENSMUST00000209718 1269 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Nkx3-1P97436 AC159474.1-201ENSMUST00000218454 374 ntTSL 3 BASIC12.01□□□□□ -0.49
Nkx3-1P97436 Gp9-201ENSMUST00000032133 881 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Nkx3-1P97436 Wdr83-201ENSMUST00000093357 1238 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Nkx3-1P97436 Trim34b-201ENSMUST00000106847 1827 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Nkx3-1P97436 Fer-202ENSMUST00000038080 2365 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Nkx3-1P97436 Ldhb-201ENSMUST00000032373 1304 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Nkx3-1P97436 Metap1d-201ENSMUST00000037210 1321 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Nkx3-1P97436 Hp-201ENSMUST00000074898 1345 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Nkx3-1P97436 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Nkx3-1P97436 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Nkx3-1P97436 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Nkx3-1P97436 Men1-207ENSMUST00000113503 1851 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
Nkx3-1P97436 Prrc2a-206ENSMUST00000174805 6741 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Nkx3-1P97436 Atg9a-208ENSMUST00000189702 4110 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Nkx3-1P97436 Ksr1-207ENSMUST00000226282 5260 ntBASIC12.01□□□□□ -0.49
Nkx3-1P97436 G630022F23Rik-201ENSMUST00000202923 3627 ntBASIC12.01□□□□□ -0.49
Nkx3-1P97436 Sox5-202ENSMUST00000077160 2526 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Nkx3-1P97436 Zbp1-201ENSMUST00000029018 1989 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Nkx3-1P97436 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Nkx3-1P97436 Gm5912-201ENSMUST00000122282 1438 ntBASIC12.01□□□□□ -0.49
Nkx3-1P97436 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Nkx3-1P97436 Krt2-201ENSMUST00000023712 2613 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Nkx3-1P97436 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Nkx3-1P97436 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms