Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Slc25a46-201ENSMUST00000060396 4371 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Rfx1P48377 Dnajc6-204ENSMUST00000106930 5127 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Rfx1P48377 Oasl1-202ENSMUST00000112143 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Rfx1P48377 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Rfx1P48377 Scg3-201ENSMUST00000034699 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Rfx1P48377 Spag1-201ENSMUST00000047348 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Rfx1P48377 Gpc2-205ENSMUST00000161827 2586 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Rfx1P48377 Ace3-201ENSMUST00000190995 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Rfx1P48377 Gm14371-201ENSMUST00000138925 1518 ntBASIC16.65■□□□□ 0.26
Rfx1P48377 Nfic-207ENSMUST00000221817 1531 ntTSL 5 BASIC16.65■□□□□ 0.26
Rfx1P48377 Mapk8ip3-206ENSMUST00000120035 4125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.26
Rfx1P48377 Anapc11-201ENSMUST00000026128 3229 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
Rfx1P48377 Arfgap1-203ENSMUST00000108860 2326 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Rfx1P48377 Arhgap28-201ENSMUST00000024840 5322 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Rfx1P48377 Cit-203ENSMUST00000112008 6087 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
Rfx1P48377 Arhgap27os3-201ENSMUST00000124462 2729 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Rfx1P48377 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Rfx1P48377 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC16.64■□□□□ 0.25
Rfx1P48377 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC16.64■□□□□ 0.25
Rfx1P48377 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC16.64■□□□□ 0.25
Rfx1P48377 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC16.64■□□□□ 0.25
Rfx1P48377 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC16.64■□□□□ 0.25
Rfx1P48377 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Rfx1P48377 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Rfx1P48377 Exoc6b-203ENSMUST00000160197 5439 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Rfx1P48377 Mks1-201ENSMUST00000038196 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Rfx1P48377 Nfkb2-201ENSMUST00000073116 3054 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Rfx1P48377 Nrxn1-201ENSMUST00000054059 4697 ntTSL 5 BASIC16.64■□□□□ 0.25
Rfx1P48377 Ephb1-202ENSMUST00000085169 4101 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Rfx1P48377 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Rfx1P48377 Mpl-203ENSMUST00000106375 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Rfx1P48377 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Rfx1P48377 Ltbp4-204ENSMUST00000118961 3444 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Rfx1P48377 Pisd-202ENSMUST00000071829 1986 ntTSL 5 BASIC16.64■□□□□ 0.25
Rfx1P48377 Bscl2-206ENSMUST00000160556 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Rfx1P48377 Fam110b-209ENSMUST00000171403 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Rfx1P48377 Arcn1-201ENSMUST00000034607 4072 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Rfx1P48377 Src-202ENSMUST00000092576 3887 ntTSL 5 BASIC16.64■□□□□ 0.25
Rfx1P48377 Capg-203ENSMUST00000114072 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Rfx1P48377 Lrrc8a-202ENSMUST00000113654 4194 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Rfx1P48377 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Rfx1P48377 Gm9754-201ENSMUST00000031305 3004 ntTSL 2 BASIC16.63■□□□□ 0.25
Rfx1P48377 Foxj2-202ENSMUST00000177927 4620 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Rfx1P48377 Nfatc4-201ENSMUST00000024179 3267 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Rfx1P48377 Fam13b-201ENSMUST00000040506 3343 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Rfx1P48377 Pex11g-202ENSMUST00000111081 666 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Rfx1P48377 Gm12882-201ENSMUST00000121696 517 ntBASIC16.63■□□□□ 0.25
Rfx1P48377 Rpph1-201ENSMUST00000175096 319 ntBASIC16.63■□□□□ 0.25
Rfx1P48377 Gm2651-201ENSMUST00000203560 838 ntBASIC16.63■□□□□ 0.25
Rfx1P48377 Gm9449-201ENSMUST00000207265 1011 ntBASIC16.63■□□□□ 0.25
Rfx1P48377 AC138767.1-201ENSMUST00000222661 415 ntBASIC16.63■□□□□ 0.25
Rfx1P48377 CT030684.1-201ENSMUST00000227292 914 ntBASIC16.63■□□□□ 0.25
Rfx1P48377 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Rfx1P48377 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Rfx1P48377 Ncaph-201ENSMUST00000110387 2695 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Rfx1P48377 Rpusd2-201ENSMUST00000028796 2706 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Rfx1P48377 Evi5l-203ENSMUST00000176149 3938 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Rfx1P48377 2900005J15Rik-202ENSMUST00000171190 2025 ntBASIC16.63■□□□□ 0.25
Rfx1P48377 AC139054.1-201ENSMUST00000226898 1598 ntBASIC16.63■□□□□ 0.25
Rfx1P48377 Slc7a7-202ENSMUST00000195970 2057 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Rfx1P48377 Armcx6-202ENSMUST00000113194 2120 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
Rfx1P48377 Egfl7-212ENSMUST00000166920 1391 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
Rfx1P48377 Jpt1-201ENSMUST00000021083 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Rfx1P48377 Slc25a15-201ENSMUST00000033871 3430 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Rfx1P48377 Rnf185-201ENSMUST00000064364 2906 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Rfx1P48377 Enc1-201ENSMUST00000041623 4737 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Rfx1P48377 Klhdc4-210ENSMUST00000174717 1662 ntTSL 5 BASIC16.62■□□□□ 0.25
Rfx1P48377 Fam49b-201ENSMUST00000063838 3797 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Rfx1P48377 Ahcyl2-201ENSMUST00000064872 2019 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
Rfx1P48377 Pltp-201ENSMUST00000059954 1809 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Rfx1P48377 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
Rfx1P48377 Nt5c-202ENSMUST00000106530 836 ntTSL 3 BASIC16.62■□□□□ 0.25
Rfx1P48377 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC16.62■□□□□ 0.25
Rfx1P48377 Crybb2-202ENSMUST00000112336 906 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Rfx1P48377 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Rfx1P48377 Rnf2-203ENSMUST00000186415 1106 ntTSL 5 BASIC16.62■□□□□ 0.25
Rfx1P48377 Rpl31-205ENSMUST00000194746 703 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Rfx1P48377 Cox7a2l-201ENSMUST00000025095 1078 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Rfx1P48377 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Rfx1P48377 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Rfx1P48377 Olfr520-201ENSMUST00000098264 951 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
Rfx1P48377 Tfap2c-202ENSMUST00000099058 2985 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Rfx1P48377 Grin1-204ENSMUST00000114310 4276 ntTSL 5 BASIC16.62■□□□□ 0.25
Rfx1P48377 Awat2-201ENSMUST00000033567 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Rfx1P48377 Fbxo28-201ENSMUST00000051431 4925 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Rfx1P48377 Gm12404-201ENSMUST00000122839 1661 ntTSL 5 BASIC16.62■□□□□ 0.25
Rfx1P48377 Jph2-201ENSMUST00000017961 4211 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Rfx1P48377 Rxrg-204ENSMUST00000111386 1705 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Rfx1P48377 Brd2-201ENSMUST00000025193 4374 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Rfx1P48377 Ap2a1-201ENSMUST00000085399 3442 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
Rfx1P48377 Cadm2-202ENSMUST00000120594 3248 ntAPPRIS ALT1 TSL 5 BASIC16.61■□□□□ 0.25
Rfx1P48377 Taf1c-201ENSMUST00000093099 3236 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Rfx1P48377 Rpl21-201ENSMUST00000035983 1856 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Rfx1P48377 Socs5-201ENSMUST00000041369 4392 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Rfx1P48377 Sema4a-214ENSMUST00000166237 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Rfx1P48377 Gm28729-201ENSMUST00000190704 1964 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
Rfx1P48377 Ebf1-202ENSMUST00000101326 3422 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Rfx1P48377 Lamtor2-202ENSMUST00000119002 568 ntTSL 2 BASIC16.61■□□□□ 0.25
Rfx1P48377 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Rfx1P48377 Gm44492-201ENSMUST00000197012 141 ntBASIC16.61■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 28.8 ms