Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Gm10561-201ENSMUST00000181563 1943 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Col1a1P11087 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col1a1P11087 Gspt2-201ENSMUST00000096368 2491 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Col1a1P11087 Ociad1-201ENSMUST00000031038 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col1a1P11087 Xpo1-202ENSMUST00000102869 6004 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col1a1P11087 F830212C03Rik-201ENSMUST00000191701 2285 ntBASIC16.11■□□□□ 0.17
Col1a1P11087 Hsd3b4-202ENSMUST00000196861 1610 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col1a1P11087 Cbx8-201ENSMUST00000026663 3580 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col1a1P11087 Gm10681-201ENSMUST00000058728 1610 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col1a1P11087 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Col1a1P11087 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col1a1P11087 1300002E11Rik-202ENSMUST00000181780 1650 ntTSL 2 BASIC16.11■□□□□ 0.17
Col1a1P11087 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Col1a1P11087 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col1a1P11087 Cenpl-203ENSMUST00000111620 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col1a1P11087 Wnt11-201ENSMUST00000067495 3451 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Col1a1P11087 Gm14350-201ENSMUST00000116642 640 ntBASIC16.1■□□□□ 0.17
Col1a1P11087 Gm14381-201ENSMUST00000122105 414 ntBASIC16.1■□□□□ 0.17
Col1a1P11087 Mogat1-201ENSMUST00000012331 1178 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col1a1P11087 Gm15738-202ENSMUST00000140892 427 ntTSL 2 BASIC16.1■□□□□ 0.17
Col1a1P11087 Gm8584-201ENSMUST00000171982 758 ntBASIC16.1■□□□□ 0.17
Col1a1P11087 Gm6621-201ENSMUST00000193251 772 ntBASIC16.1■□□□□ 0.17
Col1a1P11087 Txndc17-201ENSMUST00000021158 981 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col1a1P11087 Ifi30-202ENSMUST00000222087 981 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Col1a1P11087 Mettl5-201ENSMUST00000060447 968 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
Col1a1P11087 Gm3695-201ENSMUST00000087222 1009 ntBASIC16.1■□□□□ 0.17
Col1a1P11087 Dlk2-201ENSMUST00000061722 1532 ntTSL 5 BASIC16.1■□□□□ 0.17
Col1a1P11087 Dnaja1-210ENSMUST00000164233 5622 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Col1a1P11087 Tigd5-201ENSMUST00000192937 4801 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
Col1a1P11087 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col1a1P11087 Smarcb1-201ENSMUST00000000925 1660 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col1a1P11087 Jade1-203ENSMUST00000168086 4790 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Col1a1P11087 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Col1a1P11087 Smg9-201ENSMUST00000002280 2242 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col1a1P11087 Casp7-201ENSMUST00000026062 2350 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col1a1P11087 Pth2r-201ENSMUST00000027083 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col1a1P11087 Cdk6-201ENSMUST00000042410 2470 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col1a1P11087 Sox5-202ENSMUST00000077160 2526 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Col1a1P11087 Mrpl58-209ENSMUST00000153983 2596 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col1a1P11087 Pias3-203ENSMUST00000107077 2695 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Col1a1P11087 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Col1a1P11087 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col1a1P11087 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col1a1P11087 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
Col1a1P11087 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC16.1■□□□□ 0.17
Col1a1P11087 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Col1a1P11087 Mapkapk5-205ENSMUST00000111786 975 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Col1a1P11087 Lsm2-207ENSMUST00000173004 870 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Col1a1P11087 Mir7070-201ENSMUST00000183657 86 ntBASIC16.1■□□□□ 0.17
Col1a1P11087 Dnajb6-210ENSMUST00000196528 1018 ntTSL 5 BASIC16.1■□□□□ 0.17
Col1a1P11087 Gm43068-201ENSMUST00000201095 1273 ntBASIC16.1■□□□□ 0.17
Col1a1P11087 Tm2d2-202ENSMUST00000210536 727 ntTSL 3 BASIC16.1■□□□□ 0.17
Col1a1P11087 AC132317.1-201ENSMUST00000227227 962 ntBASIC16.1■□□□□ 0.17
Col1a1P11087 Cant1-206ENSMUST00000164927 1379 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col1a1P11087 Gm44207-201ENSMUST00000204568 1424 ntBASIC16.09■□□□□ 0.17
Col1a1P11087 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col1a1P11087 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col1a1P11087 N6amt1-203ENSMUST00000118310 1700 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Col1a1P11087 Dda1-206ENSMUST00000138892 1738 ntTSL 3 BASIC16.09■□□□□ 0.17
Col1a1P11087 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Col1a1P11087 Pld3-201ENSMUST00000117095 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col1a1P11087 Tbrg4-201ENSMUST00000000394 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col1a1P11087 Muc20-201ENSMUST00000041123 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col1a1P11087 Ppp1r3g-201ENSMUST00000132661 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col1a1P11087 Trf-201ENSMUST00000035158 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col1a1P11087 Zbtb20-202ENSMUST00000114690 2759 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col1a1P11087 Cnot11-203ENSMUST00000161515 3482 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col1a1P11087 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Col1a1P11087 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col1a1P11087 Map3k14-201ENSMUST00000021324 4246 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col1a1P11087 Nyap1-201ENSMUST00000061789 3912 ntAPPRIS P3 TSL 5 BASIC16.09■□□□□ 0.17
Col1a1P11087 Lrrc41-201ENSMUST00000030471 3065 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col1a1P11087 Gtf2h1-201ENSMUST00000006774 2736 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col1a1P11087 Tmc8-202ENSMUST00000106334 2644 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col1a1P11087 Wsb1-201ENSMUST00000017821 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col1a1P11087 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col1a1P11087 Zkscan14-203ENSMUST00000198959 2243 ntBASIC16.09■□□□□ 0.17
Col1a1P11087 Hcrtr1-201ENSMUST00000030562 2187 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col1a1P11087 Higd1a-205ENSMUST00000215007 1980 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Col1a1P11087 AC153366.2-201ENSMUST00000219461 1984 ntBASIC16.09■□□□□ 0.17
Col1a1P11087 Clcf1-201ENSMUST00000046506 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col1a1P11087 Krt35-201ENSMUST00000103127 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col1a1P11087 Akp-ps1-201ENSMUST00000188050 1600 ntBASIC16.09■□□□□ 0.17
Col1a1P11087 Celrr-202ENSMUST00000181433 1561 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Col1a1P11087 Gm18630-201ENSMUST00000222109 1397 ntBASIC16.09■□□□□ 0.17
Col1a1P11087 Eif3i-201ENSMUST00000102593 1123 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col1a1P11087 Gm24255-201ENSMUST00000104481 128 ntBASIC16.09■□□□□ 0.17
Col1a1P11087 Sectm1a-204ENSMUST00000106120 1020 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Col1a1P11087 C030017D09Rik-201ENSMUST00000163690 923 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Col1a1P11087 Gm7118-201ENSMUST00000200167 1003 ntBASIC16.09■□□□□ 0.17
Col1a1P11087 Gm21769-201ENSMUST00000211922 111 ntBASIC16.09■□□□□ 0.17
Col1a1P11087 Fam173b-201ENSMUST00000042702 1164 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col1a1P11087 Avpr1a-201ENSMUST00000020323 2670 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Col1a1P11087 9130024F11Rik-202ENSMUST00000185204 2628 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
Col1a1P11087 Ablim2-205ENSMUST00000114205 2579 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
Col1a1P11087 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC16.08■□□□□ 0.17
Col1a1P11087 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.17
Col1a1P11087 Tapt1-201ENSMUST00000055128 3513 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.17
Col1a1P11087 Psen2-204ENSMUST00000111106 2020 ntAPPRIS P2 TSL 5 BASIC16.08■□□□□ 0.17
Col1a1P11087 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 24.9 ms