Protein–RNA interactions for Protein: Q8BHH8

Clrn3, Clarin-3, mousemouse

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn3Q8BHH8 Sall4-202ENSMUST00000075044 2534 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Clrn3Q8BHH8 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC13.16□□□□□ -0.3
Clrn3Q8BHH8 Cmpk2-201ENSMUST00000020969 3200 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Clrn3Q8BHH8 Tspan9-202ENSMUST00000112171 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Clrn3Q8BHH8 Nid2-201ENSMUST00000022340 4876 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Clrn3Q8BHH8 Slc26a4-201ENSMUST00000001253 3075 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Clrn3Q8BHH8 Ptprr-204ENSMUST00000128399 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Clrn3Q8BHH8 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Clrn3Q8BHH8 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Clrn3Q8BHH8 Gm5566-201ENSMUST00000116118 459 ntBASIC13.16□□□□□ -0.3
Clrn3Q8BHH8 Map2k3os-201ENSMUST00000123544 1291 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Clrn3Q8BHH8 Cd209f-202ENSMUST00000138439 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Clrn3Q8BHH8 Cd209f-203ENSMUST00000145007 1186 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Clrn3Q8BHH8 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC13.16□□□□□ -0.3
Clrn3Q8BHH8 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Clrn3Q8BHH8 Klk1-201ENSMUST00000075162 954 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Clrn3Q8BHH8 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
Clrn3Q8BHH8 Arxes2-201ENSMUST00000058119 1532 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
Clrn3Q8BHH8 Chrna10-201ENSMUST00000084830 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Clrn3Q8BHH8 Fam208b-201ENSMUST00000096069 8338 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Clrn3Q8BHH8 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Clrn3Q8BHH8 Elmo3-202ENSMUST00000212033 2351 ntTSL 5 BASIC13.16□□□□□ -0.3
Clrn3Q8BHH8 Smc6-208ENSMUST00000218866 3373 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Clrn3Q8BHH8 Scube1-201ENSMUST00000016907 3991 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Clrn3Q8BHH8 Sgsm1-201ENSMUST00000048112 5161 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Clrn3Q8BHH8 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Clrn3Q8BHH8 Cgn-201ENSMUST00000107272 4963 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Clrn3Q8BHH8 Gm11405-201ENSMUST00000118689 1556 ntBASIC13.15□□□□□ -0.3
Clrn3Q8BHH8 Rhbdl1-202ENSMUST00000183929 1349 ntTSL 5 BASIC13.15□□□□□ -0.3
Clrn3Q8BHH8 Tmem37-201ENSMUST00000056089 1311 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Clrn3Q8BHH8 Heg1-205ENSMUST00000152782 8161 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
Clrn3Q8BHH8 Rassf10-201ENSMUST00000182858 3496 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
Clrn3Q8BHH8 Lag3-201ENSMUST00000032217 2001 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Clrn3Q8BHH8 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Clrn3Q8BHH8 Col3a1-201ENSMUST00000087883 5564 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Clrn3Q8BHH8 Il12rb1-205ENSMUST00000212657 2741 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
Clrn3Q8BHH8 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Clrn3Q8BHH8 Gm4981-201ENSMUST00000099726 1854 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
Clrn3Q8BHH8 Astl-204ENSMUST00000179618 2236 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
Clrn3Q8BHH8 2610011E03Rik-201ENSMUST00000200128 2235 ntBASIC13.15□□□□□ -0.3
Clrn3Q8BHH8 Gm2420-202ENSMUST00000202224 2249 ntBASIC13.15□□□□□ -0.3
Clrn3Q8BHH8 Gm9279-201ENSMUST00000223175 1606 ntBASIC13.15□□□□□ -0.3
Clrn3Q8BHH8 Hist1h4d-201ENSMUST00000102968 1138 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
Clrn3Q8BHH8 Park7-205ENSMUST00000105676 582 ntTSL 5 BASIC13.15□□□□□ -0.3
Clrn3Q8BHH8 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
Clrn3Q8BHH8 Crybb3-204ENSMUST00000119627 828 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
Clrn3Q8BHH8 Gm13823-201ENSMUST00000119930 345 ntBASIC13.15□□□□□ -0.3
Clrn3Q8BHH8 Gm15693-201ENSMUST00000120470 637 ntBASIC13.15□□□□□ -0.3
Clrn3Q8BHH8 Gm12786-201ENSMUST00000129617 644 ntTSL 3 BASIC13.15□□□□□ -0.3
Clrn3Q8BHH8 Gm7030-203ENSMUST00000173322 913 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Clrn3Q8BHH8 Gm27430-201ENSMUST00000184585 107 ntBASIC13.15□□□□□ -0.3
Clrn3Q8BHH8 Gm44333-201ENSMUST00000197168 107 ntBASIC13.15□□□□□ -0.3
Clrn3Q8BHH8 Tmem86b-204ENSMUST00000206610 522 ntTSL 3 BASIC13.15□□□□□ -0.3
Clrn3Q8BHH8 Gm44608-201ENSMUST00000206827 855 ntBASIC13.15□□□□□ -0.3
Clrn3Q8BHH8 AC131690.1-201ENSMUST00000218406 374 ntBASIC13.15□□□□□ -0.3
Clrn3Q8BHH8 Gm7030-201ENSMUST00000046131 913 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Clrn3Q8BHH8 Hist1h3f-201ENSMUST00000075558 1261 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
Clrn3Q8BHH8 Obp2a-201ENSMUST00000077667 744 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Clrn3Q8BHH8 Plch2-207ENSMUST00000139976 5322 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
Clrn3Q8BHH8 Gata2-202ENSMUST00000170089 3135 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Clrn3Q8BHH8 Tjap1-211ENSMUST00000225080 2412 ntAPPRIS P2 BASIC13.15□□□□□ -0.3
Clrn3Q8BHH8 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
Clrn3Q8BHH8 Esm1-201ENSMUST00000038144 2097 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Clrn3Q8BHH8 Taf1c-201ENSMUST00000093099 3236 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Clrn3Q8BHH8 L1td1-204ENSMUST00000173659 2547 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
Clrn3Q8BHH8 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Clrn3Q8BHH8 Gm10728-201ENSMUST00000194292 1829 ntBASIC13.15□□□□□ -0.3
Clrn3Q8BHH8 Cbx6-202ENSMUST00000109625 3056 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Clrn3Q8BHH8 Rest-202ENSMUST00000113449 6924 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Clrn3Q8BHH8 Gm13517-201ENSMUST00000120782 1495 ntBASIC13.15□□□□□ -0.3
Clrn3Q8BHH8 Ilvbl-212ENSMUST00000220430 2350 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Clrn3Q8BHH8 Sohlh2-201ENSMUST00000029369 2364 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Clrn3Q8BHH8 Gcat-201ENSMUST00000006544 2365 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Clrn3Q8BHH8 Dnajc22-201ENSMUST00000061295 1564 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Clrn3Q8BHH8 Atp2b3-202ENSMUST00000088429 4483 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Clrn3Q8BHH8 A430093F15Rik-204ENSMUST00000186596 2115 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Clrn3Q8BHH8 Cadm2-202ENSMUST00000120594 3248 ntAPPRIS ALT1 TSL 5 BASIC13.15□□□□□ -0.31
Clrn3Q8BHH8 Hpse2-201ENSMUST00000099428 1779 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
Clrn3Q8BHH8 Itfg1-201ENSMUST00000034140 3306 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
Clrn3Q8BHH8 Rab10os-202ENSMUST00000177896 2872 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Clrn3Q8BHH8 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Clrn3Q8BHH8 Col5a1-201ENSMUST00000028280 8406 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Clrn3Q8BHH8 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Clrn3Q8BHH8 4731419I09Rik-201ENSMUST00000180791 2820 ntTSL 2 BASIC13.14□□□□□ -0.31
Clrn3Q8BHH8 Cxcr5-204ENSMUST00000215293 2846 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Clrn3Q8BHH8 D130052B06Rik-201ENSMUST00000101371 2295 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Clrn3Q8BHH8 Dmrtc2-201ENSMUST00000011493 1619 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Clrn3Q8BHH8 Dph2-201ENSMUST00000030265 2555 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Clrn3Q8BHH8 Zfp747-201ENSMUST00000067425 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Clrn3Q8BHH8 Six3os1-211ENSMUST00000176958 2889 ntTSL 2 BASIC13.14□□□□□ -0.31
Clrn3Q8BHH8 Kdm4b-201ENSMUST00000025036 4577 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Clrn3Q8BHH8 Ropn1l-201ENSMUST00000110408 957 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Clrn3Q8BHH8 Gm14701-201ENSMUST00000117156 348 ntBASIC13.14□□□□□ -0.31
Clrn3Q8BHH8 Kif16bos-201ENSMUST00000124774 495 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Clrn3Q8BHH8 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC13.14□□□□□ -0.31
Clrn3Q8BHH8 Gm9719-201ENSMUST00000162765 543 ntBASIC13.14□□□□□ -0.31
Clrn3Q8BHH8 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
Clrn3Q8BHH8 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Clrn3Q8BHH8 Mrpl27-201ENSMUST00000025278 756 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Clrn3Q8BHH8 Ubiad1-201ENSMUST00000051633 2992 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 31.8 ms