Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Chdh-201ENSMUST00000067620 5690 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim56Q80VI1 Gm38037-201ENSMUST00000192600 1624 ntBASIC16.46■□□□□ 0.23
Trim56Q80VI1 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim56Q80VI1 Mff-201ENSMUST00000073025 1706 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Trim56Q80VI1 Rab1a-202ENSMUST00000109601 1200 ntTSL 5 BASIC16.46■□□□□ 0.23
Trim56Q80VI1 Ifnar2-203ENSMUST00000117836 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim56Q80VI1 B230217C12Rik-204ENSMUST00000170806 1118 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Trim56Q80VI1 Pfdn6-204ENSMUST00000174048 560 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
Trim56Q80VI1 H2-Pa-201ENSMUST00000182803 626 ntBASIC16.46■□□□□ 0.23
Trim56Q80VI1 4930592C13Rik-201ENSMUST00000196791 661 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Trim56Q80VI1 Gtpbp10-211ENSMUST00000198799 648 ntBASIC16.46■□□□□ 0.23
Trim56Q80VI1 Gm5425-201ENSMUST00000214125 459 ntBASIC16.46■□□□□ 0.23
Trim56Q80VI1 AC153937.4-201ENSMUST00000218479 661 ntTSL 3 BASIC16.46■□□□□ 0.23
Trim56Q80VI1 Olfr1214-201ENSMUST00000099804 936 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
Trim56Q80VI1 Lenep-201ENSMUST00000057431 1806 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
Trim56Q80VI1 Pdia4-201ENSMUST00000077290 2399 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim56Q80VI1 Atrip-201ENSMUST00000045011 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim56Q80VI1 Sema4b-204ENSMUST00000205822 3760 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim56Q80VI1 Syce1-201ENSMUST00000026553 1460 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim56Q80VI1 Ska1-201ENSMUST00000040188 2669 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim56Q80VI1 Wnk1-202ENSMUST00000060043 10575 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim56Q80VI1 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Trim56Q80VI1 Higd1a-205ENSMUST00000215007 1980 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
Trim56Q80VI1 Racgap1-201ENSMUST00000023756 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Trim56Q80VI1 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC16.45■□□□□ 0.22
Trim56Q80VI1 Camk2d-203ENSMUST00000106399 4169 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Trim56Q80VI1 Prrxl1-202ENSMUST00000186452 2371 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
Trim56Q80VI1 Cchcr1-202ENSMUST00000164242 2656 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trim56Q80VI1 Tead1-201ENSMUST00000059768 9964 ntAPPRIS P4 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trim56Q80VI1 Medag-201ENSMUST00000093110 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trim56Q80VI1 Gm33195-201ENSMUST00000220827 2337 ntTSL 5 BASIC16.45■□□□□ 0.22
Trim56Q80VI1 Lancl3-201ENSMUST00000069763 3991 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trim56Q80VI1 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trim56Q80VI1 Gins3-201ENSMUST00000034094 2519 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trim56Q80VI1 Mif4gd-202ENSMUST00000106506 993 ntTSL 3 BASIC16.45■□□□□ 0.22
Trim56Q80VI1 Tpd52-206ENSMUST00000121038 849 ntTSL 5 BASIC16.45■□□□□ 0.22
Trim56Q80VI1 Gm7063-201ENSMUST00000186840 981 ntBASIC16.45■□□□□ 0.22
Trim56Q80VI1 Gm5279-201ENSMUST00000199575 745 ntBASIC16.45■□□□□ 0.22
Trim56Q80VI1 Tspan3-203ENSMUST00000215906 842 ntTSL 3 BASIC16.45■□□□□ 0.22
Trim56Q80VI1 Tex12-202ENSMUST00000217236 1003 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trim56Q80VI1 Mpc1-201ENSMUST00000046754 920 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
Trim56Q80VI1 Fthl17c-201ENSMUST00000075792 850 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
Trim56Q80VI1 Ckmt2-201ENSMUST00000022122 1486 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trim56Q80VI1 Slc4a1-201ENSMUST00000006749 4545 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trim56Q80VI1 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trim56Q80VI1 Tbc1d22b-201ENSMUST00000048677 3592 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trim56Q80VI1 Cnih4-203ENSMUST00000111059 3127 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Trim56Q80VI1 Gm8337-201ENSMUST00000187358 1938 ntBASIC16.45■□□□□ 0.22
Trim56Q80VI1 Sh3glb1-201ENSMUST00000163279 3961 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trim56Q80VI1 Zfp467-205ENSMUST00000114560 3266 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim56Q80VI1 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim56Q80VI1 Ctdp1-201ENSMUST00000036229 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim56Q80VI1 Togaram2-205ENSMUST00000153445 3302 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
Trim56Q80VI1 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
Trim56Q80VI1 Bdh1-202ENSMUST00000115226 1496 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim56Q80VI1 6530402F18Rik-203ENSMUST00000155949 4301 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Trim56Q80VI1 A530058N18Rik-202ENSMUST00000134129 411 ntTSL 3 BASIC16.44■□□□□ 0.22
Trim56Q80VI1 Gstt4-202ENSMUST00000160211 964 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim56Q80VI1 Lce1j-202ENSMUST00000186525 703 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.22
Trim56Q80VI1 Gm18905-201ENSMUST00000205454 928 ntBASIC16.44■□□□□ 0.22
Trim56Q80VI1 6430531B16Rik-201ENSMUST00000097970 1161 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim56Q80VI1 Slc8a3-203ENSMUST00000182208 3433 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim56Q80VI1 Slc4a1ap-213ENSMUST00000202950 2499 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Trim56Q80VI1 Col2a1-201ENSMUST00000023123 5104 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Trim56Q80VI1 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Trim56Q80VI1 Wisp3-201ENSMUST00000076713 1419 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
Trim56Q80VI1 Zkscan17-201ENSMUST00000013262 4064 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim56Q80VI1 Kdm2b-201ENSMUST00000031435 3532 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Trim56Q80VI1 Clcnka-201ENSMUST00000042617 2428 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim56Q80VI1 Mon1b-201ENSMUST00000035777 4998 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trim56Q80VI1 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
Trim56Q80VI1 Mecp2-203ENSMUST00000123362 1675 ntTSL 5 BASIC16.43■□□□□ 0.22
Trim56Q80VI1 Srsf10-204ENSMUST00000105853 3058 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim56Q80VI1 Dda1-206ENSMUST00000138892 1738 ntTSL 3 BASIC16.43■□□□□ 0.22
Trim56Q80VI1 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim56Q80VI1 Anks1-201ENSMUST00000025058 6844 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim56Q80VI1 Mir698-201ENSMUST00000102164 109 ntBASIC16.43■□□□□ 0.22
Trim56Q80VI1 Gm20499-201ENSMUST00000140374 444 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
Trim56Q80VI1 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
Trim56Q80VI1 B9d2-202ENSMUST00000205325 593 ntTSL 2 BASIC16.43■□□□□ 0.22
Trim56Q80VI1 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC16.43■□□□□ 0.22
Trim56Q80VI1 Smim11-201ENSMUST00000063641 517 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim56Q80VI1 Hnrnpul1-201ENSMUST00000043765 3354 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Trim56Q80VI1 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim56Q80VI1 C230004F18Rik-203ENSMUST00000137153 2138 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Trim56Q80VI1 Gm14455-201ENSMUST00000138288 2146 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Trim56Q80VI1 Gstcd-202ENSMUST00000080583 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim56Q80VI1 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC16.43■□□□□ 0.22
Trim56Q80VI1 B230319C09Rik-201ENSMUST00000063376 1689 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Trim56Q80VI1 Rasgrp2-208ENSMUST00000113476 2296 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
Trim56Q80VI1 Rinl-206ENSMUST00000209035 2898 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim56Q80VI1 Arpc1b-201ENSMUST00000085679 3105 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trim56Q80VI1 Dhrs3-207ENSMUST00000171001 1349 ntTSL 5 BASIC16.43■□□□□ 0.22
Trim56Q80VI1 Tmem184c-201ENSMUST00000034030 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim56Q80VI1 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
Trim56Q80VI1 Ttll3-201ENSMUST00000032414 3168 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim56Q80VI1 Lsm14b-202ENSMUST00000058764 2566 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Trim56Q80VI1 Npr3-201ENSMUST00000066529 6892 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim56Q80VI1 Ptk2-202ENSMUST00000170939 3598 ntTSL 2 BASIC16.42■□□□□ 0.22
Trim56Q80VI1 Ulk1-211ENSMUST00000200299 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 46.7 ms