Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Enah-202ENSMUST00000111024 3572 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
Col18a1P39061 Klc1-203ENSMUST00000120544 2261 ntAPPRIS ALT1 TSL 5 BASIC18.09■□□□□ 0.49
Col18a1P39061 Sirt2-202ENSMUST00000122915 1828 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Col18a1P39061 Alkbh3-202ENSMUST00000111240 1395 ntTSL 5 BASIC18.09■□□□□ 0.49
Col18a1P39061 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Col18a1P39061 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Col18a1P39061 Cend1-202ENSMUST00000124444 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Col18a1P39061 4930481A15Rik-201ENSMUST00000128542 2106 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Col18a1P39061 Bend7-201ENSMUST00000056914 2302 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
Col18a1P39061 4833439L19Rik-201ENSMUST00000026989 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Col18a1P39061 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Col18a1P39061 Morn1-201ENSMUST00000030915 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Col18a1P39061 3110056K07Rik-202ENSMUST00000136690 1063 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Col18a1P39061 Gm24749-201ENSMUST00000157838 343 ntBASIC18.09■□□□□ 0.49
Col18a1P39061 Gm23699-201ENSMUST00000158835 135 ntBASIC18.09■□□□□ 0.49
Col18a1P39061 Ighv8-4-201ENSMUST00000178949 294 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
Col18a1P39061 Gm44772-201ENSMUST00000207623 1191 ntBASIC18.09■□□□□ 0.49
Col18a1P39061 Olfr368-201ENSMUST00000053990 985 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
Col18a1P39061 Aire-202ENSMUST00000105395 1630 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Col18a1P39061 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Col18a1P39061 Efemp2-209ENSMUST00000167371 1382 ntTSL 5 BASIC18.08■□□□□ 0.49
Col18a1P39061 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Col18a1P39061 Nol4-208ENSMUST00000164893 2175 ntAPPRIS ALT1 TSL 5 BASIC18.08■□□□□ 0.49
Col18a1P39061 Gm8228-201ENSMUST00000189949 2192 ntBASIC18.08■□□□□ 0.49
Col18a1P39061 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Col18a1P39061 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Col18a1P39061 Bhmt2-201ENSMUST00000015941 2467 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Col18a1P39061 Rnf207-201ENSMUST00000076183 2466 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Col18a1P39061 Gm11564-201ENSMUST00000105055 691 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
Col18a1P39061 Cdc26-202ENSMUST00000107459 654 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
Col18a1P39061 Adm2-201ENSMUST00000066991 1043 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Col18a1P39061 Ufc1-201ENSMUST00000080001 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Col18a1P39061 Srp72-202ENSMUST00000120550 2297 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
Col18a1P39061 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
Col18a1P39061 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Col18a1P39061 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
Col18a1P39061 Nme8-202ENSMUST00000091763 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Col18a1P39061 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col18a1P39061 Mrap2-201ENSMUST00000049457 1931 ntAPPRIS P1 TSL 3 BASIC18.07■□□□□ 0.48
Col18a1P39061 Gm826-202ENSMUST00000109475 803 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
Col18a1P39061 Fez1-208ENSMUST00000163816 1285 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col18a1P39061 Cox16-206ENSMUST00000168463 431 ntTSL 2 BASIC18.07■□□□□ 0.48
Col18a1P39061 Gm28694-201ENSMUST00000190681 722 ntTSL 3 BASIC18.07■□□□□ 0.48
Col18a1P39061 Gm43584-201ENSMUST00000199762 605 ntTSL 3 BASIC18.07■□□□□ 0.48
Col18a1P39061 AC110091.1-201ENSMUST00000216004 691 ntTSL 3 BASIC18.07■□□□□ 0.48
Col18a1P39061 Prss34-201ENSMUST00000037453 1216 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col18a1P39061 Ndufa3-201ENSMUST00000076657 515 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col18a1P39061 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col18a1P39061 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col18a1P39061 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Col18a1P39061 Kdelr1-205ENSMUST00000211716 1350 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Col18a1P39061 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col18a1P39061 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
Col18a1P39061 Fermt2-201ENSMUST00000045905 3293 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col18a1P39061 Zfand4-202ENSMUST00000112900 3220 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
Col18a1P39061 Krt31-201ENSMUST00000007318 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col18a1P39061 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col18a1P39061 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col18a1P39061 Shroom1-201ENSMUST00000018531 2630 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col18a1P39061 Rap1a-ps2-201ENSMUST00000118467 559 ntBASIC18.07■□□□□ 0.48
Col18a1P39061 Gm11597-201ENSMUST00000121423 964 ntBASIC18.07■□□□□ 0.48
Col18a1P39061 Gm12539-201ENSMUST00000121549 1098 ntBASIC18.07■□□□□ 0.48
Col18a1P39061 Dnajb6-202ENSMUST00000012734 1024 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Col18a1P39061 Rnf141-207ENSMUST00000176716 1080 ntTSL 2 BASIC18.07■□□□□ 0.48
Col18a1P39061 1110002L01Rik-203ENSMUST00000179637 586 ntTSL 5 BASIC18.07■□□□□ 0.48
Col18a1P39061 Gm9211-201ENSMUST00000182882 975 ntBASIC18.07■□□□□ 0.48
Col18a1P39061 Gm27552-201ENSMUST00000183351 62 ntBASIC18.07■□□□□ 0.48
Col18a1P39061 Gm27844-201ENSMUST00000183613 62 ntBASIC18.07■□□□□ 0.48
Col18a1P39061 Cd7-201ENSMUST00000026159 982 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col18a1P39061 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col18a1P39061 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col18a1P39061 Npepps-215ENSMUST00000167806 2307 ntTSL 5 BASIC18.06■□□□□ 0.48
Col18a1P39061 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col18a1P39061 Gm11667-201ENSMUST00000119828 486 ntBASIC18.06■□□□□ 0.48
Col18a1P39061 Gm12502-201ENSMUST00000120197 444 ntBASIC18.06■□□□□ 0.48
Col18a1P39061 Acyp1-204ENSMUST00000121930 634 ntTSL 2 BASIC18.06■□□□□ 0.48
Col18a1P39061 Sap25-201ENSMUST00000166099 1101 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col18a1P39061 Higd1c-201ENSMUST00000175683 507 ntAPPRIS P1 TSL 3 BASIC18.06■□□□□ 0.48
Col18a1P39061 Rassf4-202ENSMUST00000203029 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col18a1P39061 Tnfrsf17-201ENSMUST00000023140 815 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col18a1P39061 Mrps21-201ENSMUST00000067298 488 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col18a1P39061 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col18a1P39061 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col18a1P39061 Zbtb33-202ENSMUST00000115142 2567 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col18a1P39061 Psmd8-207ENSMUST00000209034 1983 ntTSL 2 BASIC18.06■□□□□ 0.48
Col18a1P39061 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
Col18a1P39061 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col18a1P39061 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col18a1P39061 Chrnb1-201ENSMUST00000045971 2155 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col18a1P39061 Epb41l5-201ENSMUST00000027632 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col18a1P39061 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC18.05■□□□□ 0.48
Col18a1P39061 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Col18a1P39061 Gm15326-202ENSMUST00000128198 1422 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Col18a1P39061 Ankrd33-201ENSMUST00000070875 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col18a1P39061 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
Col18a1P39061 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Col18a1P39061 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col18a1P39061 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col18a1P39061 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Col18a1P39061 Urad-201ENSMUST00000100433 766 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 38.7 ms