Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Secisbp2-201ENSMUST00000040117 3328 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cdx1P18111 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cdx1P18111 Fbxw9-201ENSMUST00000095220 1907 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cdx1P18111 Stau1-201ENSMUST00000049412 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cdx1P18111 Psap-203ENSMUST00000165878 2564 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cdx1P18111 Spast-201ENSMUST00000024869 4672 ntAPPRIS P2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cdx1P18111 Serpinh1-201ENSMUST00000094154 2215 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cdx1P18111 Srebf2-201ENSMUST00000023100 4989 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cdx1P18111 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
Cdx1P18111 Syde2-203ENSMUST00000200546 4712 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cdx1P18111 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Cdx1P18111 Duox1-201ENSMUST00000099461 5267 ntAPPRIS P1 TSL 2 BASIC11.32□□□□□ -0.6
Cdx1P18111 Col26a1-202ENSMUST00000111103 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cdx1P18111 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cdx1P18111 F2r-201ENSMUST00000059193 3336 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cdx1P18111 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cdx1P18111 Rhox9-202ENSMUST00000170643 2422 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Cdx1P18111 2810403A07Rik-201ENSMUST00000029696 2981 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdx1P18111 Esyt3-201ENSMUST00000042158 4483 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdx1P18111 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC11.31□□□□□ -0.6
Cdx1P18111 Gsdmcl2-203ENSMUST00000185431 1911 ntBASIC11.31□□□□□ -0.6
Cdx1P18111 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdx1P18111 Aoc2-202ENSMUST00000107264 2230 ntTSL 5 BASIC11.31□□□□□ -0.6
Cdx1P18111 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdx1P18111 4930458D05Rik-201ENSMUST00000142871 3055 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Cdx1P18111 Slc39a8-201ENSMUST00000029810 3203 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdx1P18111 Celf1-202ENSMUST00000068726 7851 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Cdx1P18111 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdx1P18111 Slc25a5-201ENSMUST00000016463 1240 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdx1P18111 Gm5682-201ENSMUST00000173402 505 ntBASIC11.31□□□□□ -0.6
Cdx1P18111 Gm37153-201ENSMUST00000193637 231 ntBASIC11.31□□□□□ -0.6
Cdx1P18111 Gm36972-201ENSMUST00000194000 676 ntTSL 3 BASIC11.31□□□□□ -0.6
Cdx1P18111 AC151286.1-201ENSMUST00000198489 145 ntBASIC11.31□□□□□ -0.6
Cdx1P18111 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC11.31□□□□□ -0.6
Cdx1P18111 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdx1P18111 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdx1P18111 Fam131b-202ENSMUST00000095974 3992 ntAPPRIS ALT1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdx1P18111 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Cdx1P18111 Enc1-201ENSMUST00000041623 4737 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdx1P18111 Radil-204ENSMUST00000110785 3708 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdx1P18111 Tcea1-202ENSMUST00000165720 2854 ntTSL 5 BASIC11.31□□□□□ -0.6
Cdx1P18111 AC238940.1-201ENSMUST00000225106 1858 ntBASIC11.31□□□□□ -0.6
Cdx1P18111 Slc39a8-202ENSMUST00000081978 3314 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdx1P18111 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdx1P18111 Dnm2-206ENSMUST00000172482 2613 ntAPPRIS P4 TSL 5 BASIC11.31□□□□□ -0.6
Cdx1P18111 Rab3d-201ENSMUST00000115351 3835 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdx1P18111 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC11.31□□□□□ -0.6
Cdx1P18111 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Cdx1P18111 Ly6h-207ENSMUST00000163116 2801 ntAPPRIS ALT1 TSL 2 BASIC11.31□□□□□ -0.6
Cdx1P18111 Sema4a-213ENSMUST00000165898 3125 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
Cdx1P18111 AC154262.2-201ENSMUST00000224310 2293 ntBASIC11.3□□□□□ -0.6
Cdx1P18111 Igfals-201ENSMUST00000050714 2111 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx1P18111 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx1P18111 Gm45188-201ENSMUST00000207592 1369 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx1P18111 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx1P18111 Sgk1-204ENSMUST00000120509 3096 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx1P18111 Otx1-201ENSMUST00000006071 2789 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx1P18111 Tepsin-202ENSMUST00000093901 2770 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx1P18111 Sgk1-213ENSMUST00000164659 2602 ntTSL 5 BASIC11.3□□□□□ -0.6
Cdx1P18111 Nek1-201ENSMUST00000034065 5401 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx1P18111 Rad9a-201ENSMUST00000025740 2046 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx1P18111 Gm36745-201ENSMUST00000213455 1594 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx1P18111 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx1P18111 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx1P18111 Tmem178b-201ENSMUST00000061740 3178 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx1P18111 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC11.3□□□□□ -0.6
Cdx1P18111 Gm4995-201ENSMUST00000117247 432 ntBASIC11.3□□□□□ -0.6
Cdx1P18111 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx1P18111 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC11.3□□□□□ -0.6
Cdx1P18111 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx1P18111 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx1P18111 Frmd5-213ENSMUST00000212518 922 ntTSL 5 BASIC11.3□□□□□ -0.6
Cdx1P18111 AC117588.1-201ENSMUST00000228510 999 ntBASIC11.3□□□□□ -0.6
Cdx1P18111 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx1P18111 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx1P18111 1110038F14Rik-201ENSMUST00000071792 1010 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx1P18111 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC11.3□□□□□ -0.6
Cdx1P18111 Dennd6b-201ENSMUST00000078953 4607 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx1P18111 Tapbp-201ENSMUST00000025161 2894 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx1P18111 Il17rd-203ENSMUST00000225146 3366 ntBASIC11.3□□□□□ -0.6
Cdx1P18111 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
Cdx1P18111 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx1P18111 Pla2g5-204ENSMUST00000102513 2289 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
Cdx1P18111 Cdyl-202ENSMUST00000163595 3575 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx1P18111 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx1P18111 Rpn2-202ENSMUST00000116380 2756 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx1P18111 Adrb3-201ENSMUST00000081438 2795 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx1P18111 Ermard-202ENSMUST00000061688 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx1P18111 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC11.3□□□□□ -0.6
Cdx1P18111 Tsku-202ENSMUST00000164726 2620 ntAPPRIS P1 TSL 2 BASIC11.3□□□□□ -0.6
Cdx1P18111 Tmem230-203ENSMUST00000110164 2957 ntAPPRIS P1 TSL 2 BASIC11.3□□□□□ -0.6
Cdx1P18111 Clcf1-201ENSMUST00000046506 1847 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx1P18111 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx1P18111 Arid3a-201ENSMUST00000019708 5361 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx1P18111 Mid1-215ENSMUST00000171433 2546 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
Cdx1P18111 Gpa33-202ENSMUST00000060833 2515 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx1P18111 Hars2-201ENSMUST00000019287 2002 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx1P18111 Steap2-203ENSMUST00000115425 4550 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdx1P18111 Smg5-201ENSMUST00000001451 4448 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx1P18111 Gm28373-201ENSMUST00000178129 2724 ntTSL 2 BASIC11.29□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 52.7 ms