Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Trim3Q9R1R2 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trim3Q9R1R2 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trim3Q9R1R2 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trim3Q9R1R2 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
Trim3Q9R1R2 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trim3Q9R1R2 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
Trim3Q9R1R2 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
Trim3Q9R1R2 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC20.33■□□□□ 0.85
Trim3Q9R1R2 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Trim3Q9R1R2 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
Trim3Q9R1R2 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Trim3Q9R1R2 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim3Q9R1R2 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC20.32■□□□□ 0.84
Trim3Q9R1R2 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC20.32■□□□□ 0.84
Trim3Q9R1R2 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC20.32■□□□□ 0.84
Trim3Q9R1R2 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim3Q9R1R2 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim3Q9R1R2 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Trim3Q9R1R2 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
Trim3Q9R1R2 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim3Q9R1R2 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim3Q9R1R2 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC20.31■□□□□ 0.84
Trim3Q9R1R2 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
Trim3Q9R1R2 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim3Q9R1R2 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC20.31■□□□□ 0.84
Trim3Q9R1R2 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC20.31■□□□□ 0.84
Trim3Q9R1R2 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC20.3■□□□□ 0.84
Trim3Q9R1R2 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim3Q9R1R2 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim3Q9R1R2 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
Trim3Q9R1R2 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Trim3Q9R1R2 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim3Q9R1R2 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Trim3Q9R1R2 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC20.29■□□□□ 0.84
Trim3Q9R1R2 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trim3Q9R1R2 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Trim3Q9R1R2 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC20.29■□□□□ 0.84
Trim3Q9R1R2 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trim3Q9R1R2 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC20.28■□□□□ 0.84
Trim3Q9R1R2 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trim3Q9R1R2 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trim3Q9R1R2 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC20.28■□□□□ 0.84
Trim3Q9R1R2 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
Trim3Q9R1R2 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trim3Q9R1R2 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim3Q9R1R2 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
Trim3Q9R1R2 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim3Q9R1R2 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim3Q9R1R2 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC20.27■□□□□ 0.84
Trim3Q9R1R2 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC20.27■□□□□ 0.84
Trim3Q9R1R2 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim3Q9R1R2 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim3Q9R1R2 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim3Q9R1R2 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim3Q9R1R2 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim3Q9R1R2 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim3Q9R1R2 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC20.26■□□□□ 0.83
Trim3Q9R1R2 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim3Q9R1R2 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim3Q9R1R2 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim3Q9R1R2 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim3Q9R1R2 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim3Q9R1R2 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
Trim3Q9R1R2 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Trim3Q9R1R2 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trim3Q9R1R2 Gm13042-201ENSMUST00000119244 1955 ntBASIC20.25■□□□□ 0.83
Trim3Q9R1R2 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
Trim3Q9R1R2 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Trim3Q9R1R2 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
Trim3Q9R1R2 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
Trim3Q9R1R2 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Trim3Q9R1R2 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Trim3Q9R1R2 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trim3Q9R1R2 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trim3Q9R1R2 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim3Q9R1R2 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC20.23■□□□□ 0.83
Trim3Q9R1R2 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Trim3Q9R1R2 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim3Q9R1R2 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Trim3Q9R1R2 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim3Q9R1R2 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Trim3Q9R1R2 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim3Q9R1R2 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC20.22■□□□□ 0.83
Trim3Q9R1R2 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC20.22■□□□□ 0.83
Trim3Q9R1R2 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Trim3Q9R1R2 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
Trim3Q9R1R2 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Trim3Q9R1R2 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim3Q9R1R2 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim3Q9R1R2 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
Trim3Q9R1R2 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trim3Q9R1R2 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Trim3Q9R1R2 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trim3Q9R1R2 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trim3Q9R1R2 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trim3Q9R1R2 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trim3Q9R1R2 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trim3Q9R1R2 AC117769.4-201ENSMUST00000225679 685 ntBASIC20.2■□□□□ 0.82
Trim3Q9R1R2 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 11.9 ms