Protein–RNA interactions for Protein: Q9EPU4

Cpsf1, Cleavage and polyadenylation specificity factor subunit 1, mousemouse

Known RBP Predictions only

Length 1,441 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf1Q9EPU4 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
Cpsf1Q9EPU4 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
Cpsf1Q9EPU4 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC30.7■■■□□ 2.51
Cpsf1Q9EPU4 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC30.7■■■□□ 2.51
Cpsf1Q9EPU4 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC30.7■■■□□ 2.51
Cpsf1Q9EPU4 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC30.7■■■□□ 2.51
Cpsf1Q9EPU4 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC30.7■■■□□ 2.51
Cpsf1Q9EPU4 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
Cpsf1Q9EPU4 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC30.7■■■□□ 2.5
Cpsf1Q9EPU4 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC30.7■■■□□ 2.5
Cpsf1Q9EPU4 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.5
Cpsf1Q9EPU4 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC30.69■■■□□ 2.5
Cpsf1Q9EPU4 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC30.69■■■□□ 2.5
Cpsf1Q9EPU4 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
Cpsf1Q9EPU4 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC30.68■■■□□ 2.5
Cpsf1Q9EPU4 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC30.68■■■□□ 2.5
Cpsf1Q9EPU4 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
Cpsf1Q9EPU4 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC30.67■■■□□ 2.5
Cpsf1Q9EPU4 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
Cpsf1Q9EPU4 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
Cpsf1Q9EPU4 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC30.66■■■□□ 2.5
Cpsf1Q9EPU4 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC30.65■■■□□ 2.5
Cpsf1Q9EPU4 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC30.65■■■□□ 2.5
Cpsf1Q9EPU4 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
Cpsf1Q9EPU4 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
Cpsf1Q9EPU4 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC30.65■■■□□ 2.5
Cpsf1Q9EPU4 Il17rd-202ENSMUST00000223942 2186 ntBASIC30.65■■■□□ 2.5
Cpsf1Q9EPU4 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC30.64■■■□□ 2.5
Cpsf1Q9EPU4 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
Cpsf1Q9EPU4 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC30.64■■■□□ 2.49
Cpsf1Q9EPU4 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.49
Cpsf1Q9EPU4 Rell2-211ENSMUST00000176902 1835 ntTSL 5 BASIC30.64■■■□□ 2.49
Cpsf1Q9EPU4 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
Cpsf1Q9EPU4 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
Cpsf1Q9EPU4 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC30.63■■■□□ 2.49
Cpsf1Q9EPU4 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC30.63■■■□□ 2.49
Cpsf1Q9EPU4 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
Cpsf1Q9EPU4 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC30.63■■■□□ 2.49
Cpsf1Q9EPU4 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC30.63■■■□□ 2.49
Cpsf1Q9EPU4 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
Cpsf1Q9EPU4 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
Cpsf1Q9EPU4 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
Cpsf1Q9EPU4 AC093043.1-201ENSMUST00000226700 898 ntBASIC30.62■■■□□ 2.49
Cpsf1Q9EPU4 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC30.62■■■□□ 2.49
Cpsf1Q9EPU4 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
Cpsf1Q9EPU4 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
Cpsf1Q9EPU4 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC30.61■■■□□ 2.49
Cpsf1Q9EPU4 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
Cpsf1Q9EPU4 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
Cpsf1Q9EPU4 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC30.6■■■□□ 2.49
Cpsf1Q9EPU4 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
Cpsf1Q9EPU4 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC30.59■■■□□ 2.49
Cpsf1Q9EPU4 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC30.59■■■□□ 2.49
Cpsf1Q9EPU4 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC30.59■■■□□ 2.49
Cpsf1Q9EPU4 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC30.58■■■□□ 2.49
Cpsf1Q9EPU4 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC30.58■■■□□ 2.49
Cpsf1Q9EPU4 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC30.57■■■□□ 2.48
Cpsf1Q9EPU4 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC30.57■■■□□ 2.48
Cpsf1Q9EPU4 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
Cpsf1Q9EPU4 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC30.57■■■□□ 2.48
Cpsf1Q9EPU4 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
Cpsf1Q9EPU4 Gm15820-201ENSMUST00000201566 728 ntBASIC30.56■■■□□ 2.48
Cpsf1Q9EPU4 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC30.56■■■□□ 2.48
Cpsf1Q9EPU4 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
Cpsf1Q9EPU4 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
Cpsf1Q9EPU4 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
Cpsf1Q9EPU4 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC30.56■■■□□ 2.48
Cpsf1Q9EPU4 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
Cpsf1Q9EPU4 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
Cpsf1Q9EPU4 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC30.56■■■□□ 2.48
Cpsf1Q9EPU4 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
Cpsf1Q9EPU4 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC30.55■■■□□ 2.48
Cpsf1Q9EPU4 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
Cpsf1Q9EPU4 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC30.55■■■□□ 2.48
Cpsf1Q9EPU4 Gm45102-201ENSMUST00000207427 857 ntBASIC30.55■■■□□ 2.48
Cpsf1Q9EPU4 Aktip-205ENSMUST00000125257 2079 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
Cpsf1Q9EPU4 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC30.54■■■□□ 2.48
Cpsf1Q9EPU4 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC30.54■■■□□ 2.48
Cpsf1Q9EPU4 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
Cpsf1Q9EPU4 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
Cpsf1Q9EPU4 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC30.53■■■□□ 2.48
Cpsf1Q9EPU4 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
Cpsf1Q9EPU4 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
Cpsf1Q9EPU4 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
Cpsf1Q9EPU4 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
Cpsf1Q9EPU4 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC30.52■■■□□ 2.48
Cpsf1Q9EPU4 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
Cpsf1Q9EPU4 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
Cpsf1Q9EPU4 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
Cpsf1Q9EPU4 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
Cpsf1Q9EPU4 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC30.51■■■□□ 2.48
Cpsf1Q9EPU4 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC30.51■■■□□ 2.47
Cpsf1Q9EPU4 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
Cpsf1Q9EPU4 Gm18755-201ENSMUST00000218030 1099 ntBASIC30.5■■■□□ 2.47
Cpsf1Q9EPU4 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
Cpsf1Q9EPU4 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
Cpsf1Q9EPU4 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC30.49■■■□□ 2.47
Cpsf1Q9EPU4 Rps24-207ENSMUST00000224568 714 ntBASIC30.49■■■□□ 2.47
Cpsf1Q9EPU4 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
Cpsf1Q9EPU4 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
Retrieved 100 of 76,532 protein–RNA pairs in 11.7 ms