Protein–RNA interactions for Protein: Q8CGV8

Mmp28, Matrix metallopeptidase 28 (epilysin), mousemouse

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Mmp28Q8CGV8 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Mmp28Q8CGV8 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
Mmp28Q8CGV8 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC18.5■□□□□ 0.55
Mmp28Q8CGV8 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC18.5■□□□□ 0.55
Mmp28Q8CGV8 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Mmp28Q8CGV8 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Mmp28Q8CGV8 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Mmp28Q8CGV8 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Mmp28Q8CGV8 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Mmp28Q8CGV8 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Mmp28Q8CGV8 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Mmp28Q8CGV8 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Mmp28Q8CGV8 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
Mmp28Q8CGV8 Gm30023-201ENSMUST00000197970 889 ntBASIC18.48■□□□□ 0.55
Mmp28Q8CGV8 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
Mmp28Q8CGV8 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
Mmp28Q8CGV8 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
Mmp28Q8CGV8 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Mmp28Q8CGV8 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Mmp28Q8CGV8 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
Mmp28Q8CGV8 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
Mmp28Q8CGV8 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Mmp28Q8CGV8 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC18.47■□□□□ 0.55
Mmp28Q8CGV8 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Mmp28Q8CGV8 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
Mmp28Q8CGV8 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
Mmp28Q8CGV8 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Mmp28Q8CGV8 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Mmp28Q8CGV8 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Mmp28Q8CGV8 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Mmp28Q8CGV8 AC153524.1-201ENSMUST00000220436 1935 ntBASIC18.47■□□□□ 0.55
Mmp28Q8CGV8 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
Mmp28Q8CGV8 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Mmp28Q8CGV8 Nkain2-201ENSMUST00000092602 558 ntBASIC18.46■□□□□ 0.55
Mmp28Q8CGV8 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Mmp28Q8CGV8 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
Mmp28Q8CGV8 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
Mmp28Q8CGV8 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
Mmp28Q8CGV8 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
Mmp28Q8CGV8 Gm4430-201ENSMUST00000192413 1943 ntBASIC18.45■□□□□ 0.54
Mmp28Q8CGV8 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
Mmp28Q8CGV8 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
Mmp28Q8CGV8 Gm15043-201ENSMUST00000118843 1543 ntBASIC18.45■□□□□ 0.54
Mmp28Q8CGV8 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
Mmp28Q8CGV8 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
Mmp28Q8CGV8 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Mmp28Q8CGV8 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Mmp28Q8CGV8 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Mmp28Q8CGV8 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Mmp28Q8CGV8 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Mmp28Q8CGV8 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Mmp28Q8CGV8 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Mmp28Q8CGV8 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Mmp28Q8CGV8 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Mmp28Q8CGV8 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Mmp28Q8CGV8 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
Mmp28Q8CGV8 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC18.43■□□□□ 0.54
Mmp28Q8CGV8 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Mmp28Q8CGV8 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
Mmp28Q8CGV8 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC18.43■□□□□ 0.54
Mmp28Q8CGV8 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Mmp28Q8CGV8 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Mmp28Q8CGV8 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Mmp28Q8CGV8 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
Mmp28Q8CGV8 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
Mmp28Q8CGV8 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
Mmp28Q8CGV8 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
Mmp28Q8CGV8 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
Mmp28Q8CGV8 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Mmp28Q8CGV8 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Mmp28Q8CGV8 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Mmp28Q8CGV8 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC18.41■□□□□ 0.54
Mmp28Q8CGV8 Gm9939-201ENSMUST00000067161 1154 ntBASIC18.41■□□□□ 0.54
Mmp28Q8CGV8 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
Mmp28Q8CGV8 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Mmp28Q8CGV8 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Mmp28Q8CGV8 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC18.4■□□□□ 0.54
Mmp28Q8CGV8 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC18.4■□□□□ 0.54
Mmp28Q8CGV8 Gm42809-201ENSMUST00000198429 1138 ntBASIC18.4■□□□□ 0.54
Mmp28Q8CGV8 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC18.4■□□□□ 0.54
Mmp28Q8CGV8 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Mmp28Q8CGV8 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Mmp28Q8CGV8 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Mmp28Q8CGV8 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC18.38■□□□□ 0.53
Mmp28Q8CGV8 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
Mmp28Q8CGV8 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Mmp28Q8CGV8 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Mmp28Q8CGV8 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Mmp28Q8CGV8 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Mmp28Q8CGV8 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Mmp28Q8CGV8 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Mmp28Q8CGV8 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Mmp28Q8CGV8 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Mmp28Q8CGV8 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Mmp28Q8CGV8 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC18.36■□□□□ 0.53
Mmp28Q8CGV8 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Mmp28Q8CGV8 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC18.36■□□□□ 0.53
Mmp28Q8CGV8 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Mmp28Q8CGV8 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Mmp28Q8CGV8 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 19.9 ms