Protein–RNA interactions for Protein: Q6T3U4

Npc1l1, Niemann-Pick C1-like protein 1, mousemouse

Predictions only

Length 1,333 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Npc1l1Q6T3U4 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Npc1l1Q6T3U4 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC26.36■■□□□ 1.81
Npc1l1Q6T3U4 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Npc1l1Q6T3U4 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Npc1l1Q6T3U4 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Npc1l1Q6T3U4 AC117245.4-201ENSMUST00000217388 1646 ntBASIC26.36■■□□□ 1.81
Npc1l1Q6T3U4 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC26.36■■□□□ 1.81
Npc1l1Q6T3U4 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC26.36■■□□□ 1.81
Npc1l1Q6T3U4 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC26.36■■□□□ 1.81
Npc1l1Q6T3U4 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Npc1l1Q6T3U4 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Npc1l1Q6T3U4 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC26.35■■□□□ 1.81
Npc1l1Q6T3U4 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC26.35■■□□□ 1.81
Npc1l1Q6T3U4 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC26.35■■□□□ 1.81
Npc1l1Q6T3U4 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC26.35■■□□□ 1.81
Npc1l1Q6T3U4 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC26.35■■□□□ 1.81
Npc1l1Q6T3U4 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC26.34■■□□□ 1.81
Npc1l1Q6T3U4 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
Npc1l1Q6T3U4 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC26.33■■□□□ 1.81
Npc1l1Q6T3U4 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Npc1l1Q6T3U4 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Npc1l1Q6T3U4 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC26.33■■□□□ 1.81
Npc1l1Q6T3U4 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Npc1l1Q6T3U4 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
Npc1l1Q6T3U4 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Npc1l1Q6T3U4 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Npc1l1Q6T3U4 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
Npc1l1Q6T3U4 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC26.32■■□□□ 1.8
Npc1l1Q6T3U4 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC26.31■■□□□ 1.8
Npc1l1Q6T3U4 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
Npc1l1Q6T3U4 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
Npc1l1Q6T3U4 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC26.3■■□□□ 1.8
Npc1l1Q6T3U4 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Npc1l1Q6T3U4 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC26.3■■□□□ 1.8
Npc1l1Q6T3U4 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC26.3■■□□□ 1.8
Npc1l1Q6T3U4 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC26.29■■□□□ 1.8
Npc1l1Q6T3U4 Gm42501-201ENSMUST00000200220 1026 ntBASIC26.29■■□□□ 1.8
Npc1l1Q6T3U4 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC26.28■■□□□ 1.8
Npc1l1Q6T3U4 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC26.28■■□□□ 1.8
Npc1l1Q6T3U4 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
Npc1l1Q6T3U4 Gm9959-201ENSMUST00000068277 390 ntBASIC26.28■■□□□ 1.8
Npc1l1Q6T3U4 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Npc1l1Q6T3U4 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Npc1l1Q6T3U4 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC26.28■■□□□ 1.8
Npc1l1Q6T3U4 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC26.27■■□□□ 1.8
Npc1l1Q6T3U4 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Npc1l1Q6T3U4 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Npc1l1Q6T3U4 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.8
Npc1l1Q6T3U4 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC26.26■■□□□ 1.79
Npc1l1Q6T3U4 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Npc1l1Q6T3U4 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC26.26■■□□□ 1.79
Npc1l1Q6T3U4 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC26.25■■□□□ 1.79
Npc1l1Q6T3U4 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Npc1l1Q6T3U4 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Npc1l1Q6T3U4 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC26.25■■□□□ 1.79
Npc1l1Q6T3U4 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC26.25■■□□□ 1.79
Npc1l1Q6T3U4 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Npc1l1Q6T3U4 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
Npc1l1Q6T3U4 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
Npc1l1Q6T3U4 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC26.23■■□□□ 1.79
Npc1l1Q6T3U4 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
Npc1l1Q6T3U4 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC26.23■■□□□ 1.79
Npc1l1Q6T3U4 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Npc1l1Q6T3U4 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
Npc1l1Q6T3U4 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Npc1l1Q6T3U4 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Npc1l1Q6T3U4 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC26.22■■□□□ 1.79
Npc1l1Q6T3U4 Gm18755-201ENSMUST00000218030 1099 ntBASIC26.22■■□□□ 1.79
Npc1l1Q6T3U4 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC26.22■■□□□ 1.79
Npc1l1Q6T3U4 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Npc1l1Q6T3U4 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC26.21■■□□□ 1.79
Npc1l1Q6T3U4 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Npc1l1Q6T3U4 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
Npc1l1Q6T3U4 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Npc1l1Q6T3U4 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
Npc1l1Q6T3U4 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC26.2■■□□□ 1.79
Npc1l1Q6T3U4 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC26.2■■□□□ 1.79
Npc1l1Q6T3U4 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC26.2■■□□□ 1.79
Npc1l1Q6T3U4 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC26.2■■□□□ 1.79
Npc1l1Q6T3U4 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
Npc1l1Q6T3U4 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
Npc1l1Q6T3U4 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC26.19■■□□□ 1.78
Npc1l1Q6T3U4 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
Npc1l1Q6T3U4 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
Npc1l1Q6T3U4 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC26.18■■□□□ 1.78
Npc1l1Q6T3U4 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Npc1l1Q6T3U4 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
Npc1l1Q6T3U4 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC26.18■■□□□ 1.78
Npc1l1Q6T3U4 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
Npc1l1Q6T3U4 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
Npc1l1Q6T3U4 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC26.18■■□□□ 1.78
Npc1l1Q6T3U4 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC26.18■■□□□ 1.78
Npc1l1Q6T3U4 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Npc1l1Q6T3U4 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Npc1l1Q6T3U4 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
Npc1l1Q6T3U4 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
Npc1l1Q6T3U4 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC26.17■■□□□ 1.78
Npc1l1Q6T3U4 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC26.17■■□□□ 1.78
Npc1l1Q6T3U4 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC26.17■■□□□ 1.78
Npc1l1Q6T3U4 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC26.17■■□□□ 1.78
Retrieved 100 of 76,532 protein–RNA pairs in 265.2 ms