Protein–RNA interactions for Protein: Q6PE01

Snrnp40, U5 small nuclear ribonucleoprotein 40 kDa protein, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Snrnp40Q6PE01 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Snrnp40Q6PE01 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Snrnp40Q6PE01 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Snrnp40Q6PE01 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Snrnp40Q6PE01 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Snrnp40Q6PE01 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Snrnp40Q6PE01 Serp2-204ENSMUST00000228055 705 ntBASIC19.42■□□□□ 0.7
Snrnp40Q6PE01 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Snrnp40Q6PE01 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC19.42■□□□□ 0.7
Snrnp40Q6PE01 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC19.42■□□□□ 0.7
Snrnp40Q6PE01 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Snrnp40Q6PE01 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC19.41■□□□□ 0.7
Snrnp40Q6PE01 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC19.41■□□□□ 0.7
Snrnp40Q6PE01 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC19.41■□□□□ 0.7
Snrnp40Q6PE01 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Snrnp40Q6PE01 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
Snrnp40Q6PE01 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
Snrnp40Q6PE01 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC19.4■□□□□ 0.7
Snrnp40Q6PE01 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Snrnp40Q6PE01 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Snrnp40Q6PE01 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Snrnp40Q6PE01 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Snrnp40Q6PE01 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Snrnp40Q6PE01 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC19.39■□□□□ 0.69
Snrnp40Q6PE01 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC19.39■□□□□ 0.69
Snrnp40Q6PE01 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Snrnp40Q6PE01 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Snrnp40Q6PE01 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Snrnp40Q6PE01 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Snrnp40Q6PE01 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Snrnp40Q6PE01 AC153524.1-201ENSMUST00000220436 1935 ntBASIC19.37■□□□□ 0.69
Snrnp40Q6PE01 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
Snrnp40Q6PE01 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC19.37■□□□□ 0.69
Snrnp40Q6PE01 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC19.37■□□□□ 0.69
Snrnp40Q6PE01 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Snrnp40Q6PE01 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
Snrnp40Q6PE01 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC19.36■□□□□ 0.69
Snrnp40Q6PE01 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
Snrnp40Q6PE01 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Snrnp40Q6PE01 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
Snrnp40Q6PE01 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Snrnp40Q6PE01 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Snrnp40Q6PE01 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Snrnp40Q6PE01 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Snrnp40Q6PE01 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
Snrnp40Q6PE01 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Snrnp40Q6PE01 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Snrnp40Q6PE01 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Snrnp40Q6PE01 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Snrnp40Q6PE01 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
Snrnp40Q6PE01 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC19.35■□□□□ 0.69
Snrnp40Q6PE01 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC19.34■□□□□ 0.69
Snrnp40Q6PE01 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Snrnp40Q6PE01 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Snrnp40Q6PE01 Gm12922-201ENSMUST00000120626 809 ntBASIC19.34■□□□□ 0.69
Snrnp40Q6PE01 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
Snrnp40Q6PE01 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC19.34■□□□□ 0.69
Snrnp40Q6PE01 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Snrnp40Q6PE01 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Snrnp40Q6PE01 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC19.33■□□□□ 0.69
Snrnp40Q6PE01 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC19.33■□□□□ 0.69
Snrnp40Q6PE01 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Snrnp40Q6PE01 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Snrnp40Q6PE01 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Snrnp40Q6PE01 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Snrnp40Q6PE01 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Snrnp40Q6PE01 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Snrnp40Q6PE01 Gm11847-201ENSMUST00000125165 1119 ntBASIC19.32■□□□□ 0.68
Snrnp40Q6PE01 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Snrnp40Q6PE01 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC19.32■□□□□ 0.68
Snrnp40Q6PE01 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Snrnp40Q6PE01 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC19.31■□□□□ 0.68
Snrnp40Q6PE01 Gm10399-202ENSMUST00000202768 748 ntBASIC19.31■□□□□ 0.68
Snrnp40Q6PE01 Appbp2os-202ENSMUST00000206972 447 ntBASIC19.31■□□□□ 0.68
Snrnp40Q6PE01 AC140930.3-201ENSMUST00000222935 274 ntBASIC19.31■□□□□ 0.68
Snrnp40Q6PE01 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Snrnp40Q6PE01 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
Snrnp40Q6PE01 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC19.3■□□□□ 0.68
Snrnp40Q6PE01 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
Snrnp40Q6PE01 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Snrnp40Q6PE01 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC19.3■□□□□ 0.68
Snrnp40Q6PE01 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Snrnp40Q6PE01 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
Snrnp40Q6PE01 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Snrnp40Q6PE01 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Snrnp40Q6PE01 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Snrnp40Q6PE01 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC19.29■□□□□ 0.68
Snrnp40Q6PE01 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Snrnp40Q6PE01 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC19.29■□□□□ 0.68
Snrnp40Q6PE01 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Snrnp40Q6PE01 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Snrnp40Q6PE01 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Snrnp40Q6PE01 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Snrnp40Q6PE01 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Snrnp40Q6PE01 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Snrnp40Q6PE01 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Snrnp40Q6PE01 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Snrnp40Q6PE01 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Snrnp40Q6PE01 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Snrnp40Q6PE01 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 15.8 ms