Protein–RNA interactions for Protein: Q62233

Six3, Homeobox protein SIX3, mousemouse

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six3Q62233 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
Six3Q62233 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC21.27■■□□□ 1
Six3Q62233 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC21.27■■□□□ 1
Six3Q62233 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
Six3Q62233 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC21.27■□□□□ 0.99
Six3Q62233 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Six3Q62233 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Six3Q62233 Gm16437-201ENSMUST00000025669 507 ntBASIC21.26■□□□□ 0.99
Six3Q62233 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Six3Q62233 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Six3Q62233 AC117245.4-201ENSMUST00000217388 1646 ntBASIC21.26■□□□□ 0.99
Six3Q62233 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Six3Q62233 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
Six3Q62233 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Six3Q62233 Gm22567-201ENSMUST00000175542 342 ntBASIC21.25■□□□□ 0.99
Six3Q62233 Gm44428-201ENSMUST00000204474 874 ntBASIC21.25■□□□□ 0.99
Six3Q62233 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC21.24■□□□□ 0.99
Six3Q62233 AC153962.1-201ENSMUST00000218530 1948 ntBASIC21.24■□□□□ 0.99
Six3Q62233 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Six3Q62233 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Six3Q62233 Gm9806-201ENSMUST00000051080 552 ntBASIC21.24■□□□□ 0.99
Six3Q62233 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Six3Q62233 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Six3Q62233 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Six3Q62233 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Six3Q62233 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Six3Q62233 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Six3Q62233 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC21.22■□□□□ 0.99
Six3Q62233 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Six3Q62233 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Six3Q62233 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Six3Q62233 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Six3Q62233 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
Six3Q62233 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC21.21■□□□□ 0.99
Six3Q62233 Rcc1l-201ENSMUST00000076228 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Six3Q62233 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Six3Q62233 AC151971.4-201ENSMUST00000214717 704 ntBASIC21.2■□□□□ 0.98
Six3Q62233 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
Six3Q62233 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Six3Q62233 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Six3Q62233 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Six3Q62233 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
Six3Q62233 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Six3Q62233 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Six3Q62233 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC21.19■□□□□ 0.98
Six3Q62233 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Six3Q62233 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
Six3Q62233 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Six3Q62233 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Six3Q62233 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Six3Q62233 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
Six3Q62233 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Six3Q62233 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC21.18■□□□□ 0.98
Six3Q62233 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
Six3Q62233 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Six3Q62233 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC21.17■□□□□ 0.98
Six3Q62233 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Six3Q62233 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Six3Q62233 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Six3Q62233 Rell2-211ENSMUST00000176902 1835 ntTSL 5 BASIC21.17■□□□□ 0.98
Six3Q62233 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Six3Q62233 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
Six3Q62233 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Six3Q62233 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
Six3Q62233 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Six3Q62233 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC21.16■□□□□ 0.98
Six3Q62233 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
Six3Q62233 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Six3Q62233 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Six3Q62233 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Six3Q62233 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Six3Q62233 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Six3Q62233 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Six3Q62233 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Six3Q62233 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Six3Q62233 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC21.15■□□□□ 0.98
Six3Q62233 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC21.14■□□□□ 0.98
Six3Q62233 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
Six3Q62233 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
Six3Q62233 Gm11687-201ENSMUST00000118911 886 ntBASIC21.14■□□□□ 0.97
Six3Q62233 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
Six3Q62233 AC117769.4-201ENSMUST00000225679 685 ntBASIC21.14■□□□□ 0.97
Six3Q62233 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Six3Q62233 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Six3Q62233 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Six3Q62233 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Six3Q62233 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Six3Q62233 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Six3Q62233 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC21.13■□□□□ 0.97
Six3Q62233 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Six3Q62233 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Six3Q62233 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Six3Q62233 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC21.13■□□□□ 0.97
Six3Q62233 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Six3Q62233 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Six3Q62233 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
Six3Q62233 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Six3Q62233 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Six3Q62233 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Six3Q62233 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 13.5 ms