Protein–RNA interactions for Protein: Q60649

Clpb, Caseinolytic peptidase B protein homolog, mousemouse

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ClpbQ60649 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
ClpbQ60649 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
ClpbQ60649 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ClpbQ60649 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ClpbQ60649 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ClpbQ60649 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC20.82■□□□□ 0.92
ClpbQ60649 AC117769.4-201ENSMUST00000225679 685 ntBASIC20.82■□□□□ 0.92
ClpbQ60649 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ClpbQ60649 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
ClpbQ60649 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
ClpbQ60649 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ClpbQ60649 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ClpbQ60649 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
ClpbQ60649 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
ClpbQ60649 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
ClpbQ60649 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC20.81■□□□□ 0.92
ClpbQ60649 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC20.81■□□□□ 0.92
ClpbQ60649 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
ClpbQ60649 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
ClpbQ60649 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
ClpbQ60649 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
ClpbQ60649 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
ClpbQ60649 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
ClpbQ60649 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
ClpbQ60649 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ClpbQ60649 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
ClpbQ60649 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
ClpbQ60649 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
ClpbQ60649 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC20.79■□□□□ 0.92
ClpbQ60649 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
ClpbQ60649 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
ClpbQ60649 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
ClpbQ60649 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC20.79■□□□□ 0.92
ClpbQ60649 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
ClpbQ60649 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC20.78■□□□□ 0.92
ClpbQ60649 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
ClpbQ60649 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
ClpbQ60649 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ClpbQ60649 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
ClpbQ60649 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
ClpbQ60649 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
ClpbQ60649 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
ClpbQ60649 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
ClpbQ60649 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
ClpbQ60649 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
ClpbQ60649 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC20.75■□□□□ 0.91
ClpbQ60649 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
ClpbQ60649 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
ClpbQ60649 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
ClpbQ60649 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC20.75■□□□□ 0.91
ClpbQ60649 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
ClpbQ60649 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
ClpbQ60649 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ClpbQ60649 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
ClpbQ60649 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
ClpbQ60649 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
ClpbQ60649 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
ClpbQ60649 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
ClpbQ60649 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
ClpbQ60649 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
ClpbQ60649 Gm28731-201ENSMUST00000185564 1569 ntBASIC20.72■□□□□ 0.91
ClpbQ60649 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
ClpbQ60649 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ClpbQ60649 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ClpbQ60649 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ClpbQ60649 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC20.72■□□□□ 0.91
ClpbQ60649 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ClpbQ60649 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
ClpbQ60649 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
ClpbQ60649 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC20.71■□□□□ 0.91
ClpbQ60649 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
ClpbQ60649 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
ClpbQ60649 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
ClpbQ60649 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
ClpbQ60649 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
ClpbQ60649 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
ClpbQ60649 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.91
ClpbQ60649 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
ClpbQ60649 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
ClpbQ60649 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
ClpbQ60649 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
ClpbQ60649 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
ClpbQ60649 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ClpbQ60649 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
ClpbQ60649 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ClpbQ60649 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
ClpbQ60649 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
ClpbQ60649 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
ClpbQ60649 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
ClpbQ60649 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ClpbQ60649 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
ClpbQ60649 Gm7199-201ENSMUST00000118327 1485 ntBASIC20.68■□□□□ 0.9
ClpbQ60649 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC20.68■□□□□ 0.9
ClpbQ60649 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
ClpbQ60649 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
ClpbQ60649 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
ClpbQ60649 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
ClpbQ60649 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
ClpbQ60649 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
ClpbQ60649 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 29.1 ms