Protein–RNA interactions for Protein: Q5R1F6

Trav5d-4, T cell receptor alpha variable 5D-4 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav5d-4Q5R1F6 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trav5d-4Q5R1F6 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trav5d-4Q5R1F6 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC18.67■□□□□ 0.58
Trav5d-4Q5R1F6 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trav5d-4Q5R1F6 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trav5d-4Q5R1F6 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trav5d-4Q5R1F6 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Trav5d-4Q5R1F6 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trav5d-4Q5R1F6 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC18.66■□□□□ 0.58
Trav5d-4Q5R1F6 AC117769.4-201ENSMUST00000225679 685 ntBASIC18.66■□□□□ 0.58
Trav5d-4Q5R1F6 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trav5d-4Q5R1F6 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trav5d-4Q5R1F6 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trav5d-4Q5R1F6 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trav5d-4Q5R1F6 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Trav5d-4Q5R1F6 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trav5d-4Q5R1F6 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trav5d-4Q5R1F6 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC18.65■□□□□ 0.58
Trav5d-4Q5R1F6 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trav5d-4Q5R1F6 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC18.65■□□□□ 0.58
Trav5d-4Q5R1F6 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Trav5d-4Q5R1F6 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Trav5d-4Q5R1F6 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trav5d-4Q5R1F6 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trav5d-4Q5R1F6 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trav5d-4Q5R1F6 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trav5d-4Q5R1F6 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trav5d-4Q5R1F6 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Trav5d-4Q5R1F6 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Trav5d-4Q5R1F6 Gm11175-201ENSMUST00000116172 543 ntBASIC18.63■□□□□ 0.57
Trav5d-4Q5R1F6 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trav5d-4Q5R1F6 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trav5d-4Q5R1F6 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Trav5d-4Q5R1F6 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trav5d-4Q5R1F6 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trav5d-4Q5R1F6 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Trav5d-4Q5R1F6 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Trav5d-4Q5R1F6 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trav5d-4Q5R1F6 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trav5d-4Q5R1F6 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Trav5d-4Q5R1F6 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trav5d-4Q5R1F6 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Trav5d-4Q5R1F6 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
Trav5d-4Q5R1F6 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Trav5d-4Q5R1F6 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trav5d-4Q5R1F6 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trav5d-4Q5R1F6 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trav5d-4Q5R1F6 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trav5d-4Q5R1F6 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Trav5d-4Q5R1F6 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC18.61■□□□□ 0.57
Trav5d-4Q5R1F6 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Trav5d-4Q5R1F6 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
Trav5d-4Q5R1F6 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trav5d-4Q5R1F6 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
Trav5d-4Q5R1F6 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trav5d-4Q5R1F6 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC18.6■□□□□ 0.57
Trav5d-4Q5R1F6 AC117245.4-201ENSMUST00000217388 1646 ntBASIC18.6■□□□□ 0.57
Trav5d-4Q5R1F6 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Trav5d-4Q5R1F6 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trav5d-4Q5R1F6 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
Trav5d-4Q5R1F6 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trav5d-4Q5R1F6 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trav5d-4Q5R1F6 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trav5d-4Q5R1F6 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
Trav5d-4Q5R1F6 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trav5d-4Q5R1F6 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC18.59■□□□□ 0.57
Trav5d-4Q5R1F6 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trav5d-4Q5R1F6 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trav5d-4Q5R1F6 Eri3-201ENSMUST00000037127 1719 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trav5d-4Q5R1F6 Gm22567-201ENSMUST00000175542 342 ntBASIC18.58■□□□□ 0.56
Trav5d-4Q5R1F6 Gm27502-201ENSMUST00000183495 199 ntBASIC18.58■□□□□ 0.56
Trav5d-4Q5R1F6 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
Trav5d-4Q5R1F6 AC115037.1-201ENSMUST00000223391 2173 ntBASIC18.57■□□□□ 0.56
Trav5d-4Q5R1F6 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trav5d-4Q5R1F6 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trav5d-4Q5R1F6 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trav5d-4Q5R1F6 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Trav5d-4Q5R1F6 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trav5d-4Q5R1F6 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
Trav5d-4Q5R1F6 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trav5d-4Q5R1F6 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trav5d-4Q5R1F6 Rell2-211ENSMUST00000176902 1835 ntTSL 5 BASIC18.56■□□□□ 0.56
Trav5d-4Q5R1F6 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC18.56■□□□□ 0.56
Trav5d-4Q5R1F6 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC18.56■□□□□ 0.56
Trav5d-4Q5R1F6 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trav5d-4Q5R1F6 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC18.56■□□□□ 0.56
Trav5d-4Q5R1F6 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trav5d-4Q5R1F6 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trav5d-4Q5R1F6 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Trav5d-4Q5R1F6 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Trav5d-4Q5R1F6 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC18.55■□□□□ 0.56
Trav5d-4Q5R1F6 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trav5d-4Q5R1F6 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC18.54■□□□□ 0.56
Trav5d-4Q5R1F6 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trav5d-4Q5R1F6 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trav5d-4Q5R1F6 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trav5d-4Q5R1F6 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC18.54■□□□□ 0.56
Trav5d-4Q5R1F6 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Trav5d-4Q5R1F6 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Trav5d-4Q5R1F6 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC18.54■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 100.2 ms