Protein–RNA interactions for Protein: Q5NCP0

Rnf43, E3 ubiquitin-protein ligase RNF43, mousemouse

Predictions only

Length 784 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf43Q5NCP0 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC22.3■■□□□ 1.16
Rnf43Q5NCP0 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Rnf43Q5NCP0 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC22.3■■□□□ 1.16
Rnf43Q5NCP0 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Rnf43Q5NCP0 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC22.29■■□□□ 1.16
Rnf43Q5NCP0 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Rnf43Q5NCP0 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Rnf43Q5NCP0 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Rnf43Q5NCP0 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Rnf43Q5NCP0 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Rnf43Q5NCP0 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Rnf43Q5NCP0 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC22.28■■□□□ 1.16
Rnf43Q5NCP0 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Rnf43Q5NCP0 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
Rnf43Q5NCP0 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Rnf43Q5NCP0 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Rnf43Q5NCP0 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Rnf43Q5NCP0 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Rnf43Q5NCP0 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Rnf43Q5NCP0 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
Rnf43Q5NCP0 Gm13241-201ENSMUST00000094493 780 ntBASIC22.26■■□□□ 1.15
Rnf43Q5NCP0 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC22.25■■□□□ 1.15
Rnf43Q5NCP0 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Rnf43Q5NCP0 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
Rnf43Q5NCP0 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
Rnf43Q5NCP0 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
Rnf43Q5NCP0 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
Rnf43Q5NCP0 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Rnf43Q5NCP0 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC22.24■■□□□ 1.15
Rnf43Q5NCP0 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
Rnf43Q5NCP0 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Rnf43Q5NCP0 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Rnf43Q5NCP0 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Rnf43Q5NCP0 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
Rnf43Q5NCP0 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
Rnf43Q5NCP0 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Rnf43Q5NCP0 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Rnf43Q5NCP0 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC22.23■■□□□ 1.15
Rnf43Q5NCP0 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
Rnf43Q5NCP0 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Rnf43Q5NCP0 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Rnf43Q5NCP0 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC22.23■■□□□ 1.15
Rnf43Q5NCP0 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Rnf43Q5NCP0 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC22.23■■□□□ 1.15
Rnf43Q5NCP0 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Rnf43Q5NCP0 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Rnf43Q5NCP0 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC22.22■■□□□ 1.15
Rnf43Q5NCP0 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC22.22■■□□□ 1.15
Rnf43Q5NCP0 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC22.22■■□□□ 1.15
Rnf43Q5NCP0 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Rnf43Q5NCP0 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC22.21■■□□□ 1.15
Rnf43Q5NCP0 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC22.21■■□□□ 1.15
Rnf43Q5NCP0 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC22.21■■□□□ 1.15
Rnf43Q5NCP0 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Rnf43Q5NCP0 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
Rnf43Q5NCP0 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.15
Rnf43Q5NCP0 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC22.2■■□□□ 1.15
Rnf43Q5NCP0 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC22.2■■□□□ 1.14
Rnf43Q5NCP0 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Rnf43Q5NCP0 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Rnf43Q5NCP0 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC22.19■■□□□ 1.14
Rnf43Q5NCP0 AC122428.3-201ENSMUST00000215551 2290 ntBASIC22.19■■□□□ 1.14
Rnf43Q5NCP0 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Rnf43Q5NCP0 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Rnf43Q5NCP0 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Rnf43Q5NCP0 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Rnf43Q5NCP0 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
Rnf43Q5NCP0 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Rnf43Q5NCP0 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Rnf43Q5NCP0 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC22.17■■□□□ 1.14
Rnf43Q5NCP0 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Rnf43Q5NCP0 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC22.17■■□□□ 1.14
Rnf43Q5NCP0 Gm40881-201ENSMUST00000223397 166 ntBASIC22.17■■□□□ 1.14
Rnf43Q5NCP0 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Rnf43Q5NCP0 Gm43034-201ENSMUST00000198678 1364 ntBASIC22.16■■□□□ 1.14
Rnf43Q5NCP0 Gm22238-201ENSMUST00000175222 88 ntBASIC22.16■■□□□ 1.14
Rnf43Q5NCP0 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC22.16■■□□□ 1.14
Rnf43Q5NCP0 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC22.16■■□□□ 1.14
Rnf43Q5NCP0 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC22.16■■□□□ 1.14
Rnf43Q5NCP0 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Rnf43Q5NCP0 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
Rnf43Q5NCP0 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Rnf43Q5NCP0 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC22.15■■□□□ 1.14
Rnf43Q5NCP0 Gm28536-201ENSMUST00000190971 1317 ntBASIC22.15■■□□□ 1.14
Rnf43Q5NCP0 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC22.15■■□□□ 1.14
Rnf43Q5NCP0 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC22.15■■□□□ 1.14
Rnf43Q5NCP0 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC22.15■■□□□ 1.14
Rnf43Q5NCP0 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Rnf43Q5NCP0 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Rnf43Q5NCP0 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC22.15■■□□□ 1.14
Rnf43Q5NCP0 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC22.14■■□□□ 1.14
Rnf43Q5NCP0 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
Rnf43Q5NCP0 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC22.14■■□□□ 1.13
Rnf43Q5NCP0 Gm9847-201ENSMUST00000052528 599 ntBASIC22.14■■□□□ 1.13
Rnf43Q5NCP0 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
Rnf43Q5NCP0 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Rnf43Q5NCP0 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
Rnf43Q5NCP0 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC22.14■■□□□ 1.13
Rnf43Q5NCP0 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Rnf43Q5NCP0 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC22.13■■□□□ 1.13
Retrieved 100 of 76,532 protein–RNA pairs in 35.8 ms