Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC15.69■□□□□ 0.1
Ushbp1Q8R370 Gm15321-201ENSMUST00000121290 288 ntBASIC15.69■□□□□ 0.1
Ushbp1Q8R370 Prn-201ENSMUST00000124100 2132 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
Ushbp1Q8R370 Gm12454-201ENSMUST00000139119 978 ntTSL 2 BASIC15.69■□□□□ 0.1
Ushbp1Q8R370 Mocs2-207ENSMUST00000166104 1193 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Ushbp1Q8R370 Gm7030-203ENSMUST00000173322 913 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ushbp1Q8R370 Gm10142-201ENSMUST00000179767 363 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
Ushbp1Q8R370 Nabp1-202ENSMUST00000185534 708 ntTSL 2 BASIC15.69■□□□□ 0.1
Ushbp1Q8R370 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
Ushbp1Q8R370 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
Ushbp1Q8R370 Fis1-201ENSMUST00000019198 786 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ushbp1Q8R370 AC149588.3-201ENSMUST00000227515 150 ntBASIC15.69■□□□□ 0.1
Ushbp1Q8R370 Epo-201ENSMUST00000031723 715 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ushbp1Q8R370 Gm7030-201ENSMUST00000046131 913 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Ushbp1Q8R370 Msgn1-201ENSMUST00000049877 613 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
Ushbp1Q8R370 Hist1h3f-201ENSMUST00000075558 1261 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
Ushbp1Q8R370 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ushbp1Q8R370 Rbbp7-201ENSMUST00000033720 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ushbp1Q8R370 Plekha1-202ENSMUST00000075181 2301 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ushbp1Q8R370 Serpina11-202ENSMUST00000120251 1461 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ushbp1Q8R370 Aim2-202ENSMUST00000147604 2839 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Ushbp1Q8R370 Tubg2-201ENSMUST00000043654 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ushbp1Q8R370 4930579G24Rik-201ENSMUST00000029388 1970 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ushbp1Q8R370 Smarca5-201ENSMUST00000043359 6113 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ushbp1Q8R370 Tub-202ENSMUST00000119474 2097 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Ushbp1Q8R370 Epha2-201ENSMUST00000006614 3913 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ushbp1Q8R370 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Ushbp1Q8R370 Kcnq2-217ENSMUST00000149964 8209 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ushbp1Q8R370 Cmpk1-201ENSMUST00000030491 3170 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ushbp1Q8R370 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ushbp1Q8R370 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ushbp1Q8R370 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ushbp1Q8R370 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Ushbp1Q8R370 Cpne6-202ENSMUST00000163767 2004 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ushbp1Q8R370 Ptprn2-201ENSMUST00000070733 3201 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ushbp1Q8R370 Ablim1-209ENSMUST00000111546 2267 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Ushbp1Q8R370 Rtfdc1-201ENSMUST00000029005 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ushbp1Q8R370 Kcnab2-202ENSMUST00000105648 1576 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ushbp1Q8R370 Pebp1-202ENSMUST00000111973 779 ntTSL 3 BASIC15.68■□□□□ 0.1
Ushbp1Q8R370 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Ushbp1Q8R370 Gm27631-201ENSMUST00000184163 466 ntBASIC15.68■□□□□ 0.1
Ushbp1Q8R370 Rnf2-203ENSMUST00000186415 1106 ntTSL 5 BASIC15.68■□□□□ 0.1
Ushbp1Q8R370 AL593843.1-201ENSMUST00000195891 145 ntBASIC15.68■□□□□ 0.1
Ushbp1Q8R370 AC130829.1-201ENSMUST00000221548 494 ntBASIC15.68■□□□□ 0.1
Ushbp1Q8R370 Cdk7-205ENSMUST00000225990 1159 ntBASIC15.68■□□□□ 0.1
Ushbp1Q8R370 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ushbp1Q8R370 Nradd-201ENSMUST00000035069 1223 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ushbp1Q8R370 Gm11992-201ENSMUST00000043285 2400 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ushbp1Q8R370 Lysmd3-201ENSMUST00000049055 2338 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Ushbp1Q8R370 Mcmbp-201ENSMUST00000057557 4237 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ushbp1Q8R370 Gm17029-202ENSMUST00000146124 2899 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Ushbp1Q8R370 Gm44291-201ENSMUST00000203102 2865 ntBASIC15.68■□□□□ 0.1
Ushbp1Q8R370 Ckmt1-202ENSMUST00000078222 1518 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ushbp1Q8R370 Rab11fip2-201ENSMUST00000051996 4482 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Ushbp1Q8R370 Fbxo21-206ENSMUST00000202447 3959 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ushbp1Q8R370 4933435F18Rik-202ENSMUST00000154878 2174 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Ushbp1Q8R370 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ushbp1Q8R370 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Ushbp1Q8R370 Thnsl2-202ENSMUST00000160918 2077 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ushbp1Q8R370 Gm26576-201ENSMUST00000181018 1977 ntTSL 5 BASIC15.67■□□□□ 0.1
Ushbp1Q8R370 Cdkn2aip-202ENSMUST00000212175 3393 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ushbp1Q8R370 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ushbp1Q8R370 Olfr160-203ENSMUST00000215727 1667 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Ushbp1Q8R370 Tmem101-201ENSMUST00000021296 1574 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ushbp1Q8R370 Sh3glb1-201ENSMUST00000163279 3961 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ushbp1Q8R370 Catip-201ENSMUST00000097697 2101 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ushbp1Q8R370 Car4-201ENSMUST00000103194 1256 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ushbp1Q8R370 Pla2g2e-202ENSMUST00000105803 381 ntTSL 5 BASIC15.67■□□□□ 0.1
Ushbp1Q8R370 Gm4204-201ENSMUST00000110798 1231 ntBASIC15.67■□□□□ 0.1
Ushbp1Q8R370 Gm15701-201ENSMUST00000129559 573 ntTSL 3 BASIC15.67■□□□□ 0.1
Ushbp1Q8R370 Mrpl27-201ENSMUST00000025278 756 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ushbp1Q8R370 Olfr750-201ENSMUST00000048478 1132 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
Ushbp1Q8R370 Pdlim7-203ENSMUST00000069968 1006 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Ushbp1Q8R370 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ushbp1Q8R370 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ushbp1Q8R370 Gm9347-201ENSMUST00000211473 1607 ntBASIC15.67■□□□□ 0.1
Ushbp1Q8R370 Lime1-201ENSMUST00000048077 1959 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ushbp1Q8R370 Zhx3-203ENSMUST00000109460 4480 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ushbp1Q8R370 Tmem39a-214ENSMUST00000171687 2667 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Ushbp1Q8R370 Pou2f2-209ENSMUST00000175774 7047 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ushbp1Q8R370 Arid4b-201ENSMUST00000039538 5844 ntTSL 5 BASIC15.67■□□□□ 0.1
Ushbp1Q8R370 Gm45751-201ENSMUST00000210185 1573 ntBASIC15.66■□□□□ 0.1
Ushbp1Q8R370 Tcf25-208ENSMUST00000212571 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ushbp1Q8R370 Cnot7-201ENSMUST00000034012 2615 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ushbp1Q8R370 Il15-201ENSMUST00000034148 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ushbp1Q8R370 Ccny-201ENSMUST00000053917 4017 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ushbp1Q8R370 Pcdha8-201ENSMUST00000194038 5338 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ushbp1Q8R370 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ushbp1Q8R370 Serinc1-201ENSMUST00000020027 2880 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ushbp1Q8R370 Stip1-201ENSMUST00000025918 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ushbp1Q8R370 Gm28496-202ENSMUST00000137742 2752 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Ushbp1Q8R370 Rgs3-201ENSMUST00000065870 4698 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Ushbp1Q8R370 Tmem2-201ENSMUST00000025663 6585 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ushbp1Q8R370 Pigg-203ENSMUST00000119014 4573 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Ushbp1Q8R370 Hnrnpa3-202ENSMUST00000111961 1734 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ushbp1Q8R370 Eif4ebp2-201ENSMUST00000020288 5784 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ushbp1Q8R370 Barhl2-201ENSMUST00000086795 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ushbp1Q8R370 Gm38042-201ENSMUST00000191614 5208 ntBASIC15.66■□□□□ 0.1
Ushbp1Q8R370 Parp3-203ENSMUST00000123555 2495 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ushbp1Q8R370 Slc4a1ap-213ENSMUST00000202950 2499 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 31.5 ms