Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 AI467606-201ENSMUST00000056288 1932 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Vps53Q8CCB4 Lipo3-201ENSMUST00000025694 2768 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Vps53Q8CCB4 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Vps53Q8CCB4 2610507B11Rik-201ENSMUST00000010421 7443 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Vps53Q8CCB4 Pcdha1-202ENSMUST00000193839 4925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Vps53Q8CCB4 Hnrnpa2b1-204ENSMUST00000203220 1638 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Vps53Q8CCB4 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Vps53Q8CCB4 Rbbp8nl-201ENSMUST00000038529 2319 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Vps53Q8CCB4 Ccdc160-201ENSMUST00000101588 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Vps53Q8CCB4 Pls1-201ENSMUST00000093800 3704 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Vps53Q8CCB4 Gm996-203ENSMUST00000188161 2925 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Vps53Q8CCB4 Fhad1-202ENSMUST00000105779 4263 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Vps53Q8CCB4 Pcp2-202ENSMUST00000128566 1447 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
Vps53Q8CCB4 Fgfr3-210ENSMUST00000169212 4245 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
Vps53Q8CCB4 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Vps53Q8CCB4 Chchd5-201ENSMUST00000035481 1325 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Vps53Q8CCB4 Spata3-209ENSMUST00000152501 743 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Vps53Q8CCB4 Mrps18c-201ENSMUST00000016977 638 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Vps53Q8CCB4 Mir124-2hg-206ENSMUST00000189754 525 ntTSL 3 BASIC16.3■□□□□ 0.2
Vps53Q8CCB4 Gm9794-201ENSMUST00000202370 423 ntBASIC16.3■□□□□ 0.2
Vps53Q8CCB4 Rit1-201ENSMUST00000029692 1204 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Vps53Q8CCB4 Pag1-204ENSMUST00000161949 8256 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Vps53Q8CCB4 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
Vps53Q8CCB4 Hmga2-201ENSMUST00000072777 3710 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Vps53Q8CCB4 Clcnka-201ENSMUST00000042617 2428 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Vps53Q8CCB4 Gm8334-201ENSMUST00000112755 1662 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Vps53Q8CCB4 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Vps53Q8CCB4 Spg20-201ENSMUST00000044116 3770 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Vps53Q8CCB4 Cacna1g-204ENSMUST00000107785 7523 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Vps53Q8CCB4 Scarf1-202ENSMUST00000118243 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Vps53Q8CCB4 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Vps53Q8CCB4 Gif-201ENSMUST00000025585 1537 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vps53Q8CCB4 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vps53Q8CCB4 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Vps53Q8CCB4 Iqsec3-203ENSMUST00000151397 8067 ntTSL 2 BASIC16.29■□□□□ 0.2
Vps53Q8CCB4 Rbm33-201ENSMUST00000030920 3955 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Vps53Q8CCB4 Pprc1-202ENSMUST00000099392 3956 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Vps53Q8CCB4 Sytl1-201ENSMUST00000030674 1951 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vps53Q8CCB4 Cecr2-202ENSMUST00000112686 9212 ntAPPRIS P2 TSL 5 BASIC16.29■□□□□ 0.2
Vps53Q8CCB4 Rab3a-204ENSMUST00000110093 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vps53Q8CCB4 Tmem176b-203ENSMUST00000166247 1414 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vps53Q8CCB4 Krit1-211ENSMUST00000200386 2343 ntTSL 5 BASIC16.29■□□□□ 0.2
Vps53Q8CCB4 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vps53Q8CCB4 Gamt-202ENSMUST00000105363 988 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vps53Q8CCB4 Crybb3-205ENSMUST00000120506 804 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
Vps53Q8CCB4 Unkl-205ENSMUST00000161679 1053 ntTSL 5 BASIC16.29■□□□□ 0.2
Vps53Q8CCB4 Gm5819-201ENSMUST00000171469 465 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Vps53Q8CCB4 Gm28631-201ENSMUST00000190740 334 ntBASIC16.29■□□□□ 0.2
Vps53Q8CCB4 Saa2-203ENSMUST00000210769 652 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vps53Q8CCB4 Armc12-201ENSMUST00000025060 1083 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vps53Q8CCB4 Ramp3-201ENSMUST00000045374 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vps53Q8CCB4 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vps53Q8CCB4 Zswim7-201ENSMUST00000072916 732 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vps53Q8CCB4 Saa2-201ENSMUST00000075982 606 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vps53Q8CCB4 Fbxl4-201ENSMUST00000039234 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vps53Q8CCB4 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vps53Q8CCB4 Ubxn4-201ENSMUST00000027592 4113 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vps53Q8CCB4 Tc2n-203ENSMUST00000160830 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vps53Q8CCB4 Pak1-205ENSMUST00000206984 2794 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Vps53Q8CCB4 C2cd4c-201ENSMUST00000059699 6729 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vps53Q8CCB4 Elk4-201ENSMUST00000027696 1586 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vps53Q8CCB4 Anks1b-205ENSMUST00000179694 2663 ntTSL 5 BASIC16.29■□□□□ 0.2
Vps53Q8CCB4 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vps53Q8CCB4 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Vps53Q8CCB4 5033426O07Rik-202ENSMUST00000212635 2110 ntTSL 5 BASIC16.28■□□□□ 0.2
Vps53Q8CCB4 Hist1h2be-202ENSMUST00000091704 2480 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Vps53Q8CCB4 Tpbg-202ENSMUST00000098500 3481 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Vps53Q8CCB4 Gm36839-201ENSMUST00000222088 2093 ntTSL 5 BASIC16.28■□□□□ 0.2
Vps53Q8CCB4 Cyp21a2-ps-201ENSMUST00000172970 1383 ntBASIC16.28■□□□□ 0.2
Vps53Q8CCB4 Srp72-202ENSMUST00000120550 2297 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Vps53Q8CCB4 Gm6756-201ENSMUST00000180647 1620 ntBASIC16.28■□□□□ 0.2
Vps53Q8CCB4 Gm5566-201ENSMUST00000116118 459 ntBASIC16.28■□□□□ 0.2
Vps53Q8CCB4 B9d2-202ENSMUST00000205325 593 ntTSL 2 BASIC16.28■□□□□ 0.2
Vps53Q8CCB4 Slc10a7-204ENSMUST00000209992 939 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Vps53Q8CCB4 Gm32351-201ENSMUST00000220503 438 ntTSL 5 BASIC16.28■□□□□ 0.2
Vps53Q8CCB4 Pemt-201ENSMUST00000000310 953 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
Vps53Q8CCB4 Gm5519-201ENSMUST00000042061 513 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Vps53Q8CCB4 Emd-203ENSMUST00000096424 896 ntTSL 5 BASIC16.28■□□□□ 0.2
Vps53Q8CCB4 1700034H15Rik-202ENSMUST00000139827 4354 ntTSL 5 BASIC16.28■□□□□ 0.2
Vps53Q8CCB4 Bid-201ENSMUST00000004560 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Vps53Q8CCB4 Cdt1-201ENSMUST00000006760 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Vps53Q8CCB4 Prkcd-207ENSMUST00000112210 2777 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Vps53Q8CCB4 Nfatc1-202ENSMUST00000078049 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Vps53Q8CCB4 Camk2d-206ENSMUST00000106402 4180 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Vps53Q8CCB4 Mcrs1-202ENSMUST00000163506 1795 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Vps53Q8CCB4 Trim68-205ENSMUST00000210855 2301 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Vps53Q8CCB4 Kctd14-201ENSMUST00000050732 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Vps53Q8CCB4 Gm15850-201ENSMUST00000134998 2049 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Vps53Q8CCB4 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Vps53Q8CCB4 Itfg2-206ENSMUST00000203374 1394 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
Vps53Q8CCB4 Nt5c3b-201ENSMUST00000092688 1399 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Vps53Q8CCB4 Kif7-204ENSMUST00000184137 4093 ntAPPRIS P3 TSL 5 BASIC16.27■□□□□ 0.2
Vps53Q8CCB4 Prx-203ENSMUST00000108355 5433 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Vps53Q8CCB4 Cdcp2-202ENSMUST00000221740 1623 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
Vps53Q8CCB4 Pelp1-201ENSMUST00000019065 3435 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Vps53Q8CCB4 Asb18-201ENSMUST00000086882 3862 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Vps53Q8CCB4 Gm24543-201ENSMUST00000103867 82 ntBASIC16.27■□□□□ 0.2
Vps53Q8CCB4 Tmem128-202ENSMUST00000119047 726 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Vps53Q8CCB4 Gm9719-201ENSMUST00000162765 543 ntBASIC16.27■□□□□ 0.2
Vps53Q8CCB4 Nradd-201ENSMUST00000035069 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 54.6 ms