Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC14.23□□□□□ -0.13
Sh3rf1Q69ZI1 AC126408.1-201ENSMUST00000225184 523 ntBASIC14.23□□□□□ -0.13
Sh3rf1Q69ZI1 Wdyhv1-206ENSMUST00000227142 786 ntBASIC14.23□□□□□ -0.13
Sh3rf1Q69ZI1 Gzma-201ENSMUST00000023897 878 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Sh3rf1Q69ZI1 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC14.23□□□□□ -0.13
Sh3rf1Q69ZI1 Radil-204ENSMUST00000110785 3708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Sh3rf1Q69ZI1 Cbl-206ENSMUST00000206147 3452 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Sh3rf1Q69ZI1 Map7d1-202ENSMUST00000106132 3195 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
Sh3rf1Q69ZI1 B3gat1-206ENSMUST00000161431 3858 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Sh3rf1Q69ZI1 Ptbp2-201ENSMUST00000029780 3364 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Sh3rf1Q69ZI1 Esrrb-202ENSMUST00000110203 2363 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Sh3rf1Q69ZI1 Upk1a-201ENSMUST00000006476 1421 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Sh3rf1Q69ZI1 Pde4a-202ENSMUST00000039413 4653 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Sh3rf1Q69ZI1 Arid4b-202ENSMUST00000110533 3020 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Sh3rf1Q69ZI1 Vps35-201ENSMUST00000034131 3474 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Sh3rf1Q69ZI1 Nsd3-204ENSMUST00000139966 5261 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Sh3rf1Q69ZI1 Coq6-203ENSMUST00000110278 1354 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Sh3rf1Q69ZI1 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sh3rf1Q69ZI1 Gm38094-201ENSMUST00000195864 2978 ntBASIC14.22□□□□□ -0.13
Sh3rf1Q69ZI1 Syt10-201ENSMUST00000029441 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sh3rf1Q69ZI1 Kif3a-208ENSMUST00000173744 2257 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Sh3rf1Q69ZI1 Cadps2-209ENSMUST00000142913 4533 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Sh3rf1Q69ZI1 Tmod2-207ENSMUST00000215462 1564 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Sh3rf1Q69ZI1 Cxcl16-201ENSMUST00000019064 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sh3rf1Q69ZI1 Cyp20a1-201ENSMUST00000060608 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sh3rf1Q69ZI1 Osr2-201ENSMUST00000022952 1724 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Sh3rf1Q69ZI1 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC14.22□□□□□ -0.13
Sh3rf1Q69ZI1 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC14.22□□□□□ -0.13
Sh3rf1Q69ZI1 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC14.22□□□□□ -0.13
Sh3rf1Q69ZI1 Styxl1-207ENSMUST00000177559 1236 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Sh3rf1Q69ZI1 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Sh3rf1Q69ZI1 CR974585.1-201ENSMUST00000221790 1263 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Sh3rf1Q69ZI1 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Sh3rf1Q69ZI1 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sh3rf1Q69ZI1 Slc19a2-201ENSMUST00000044021 3571 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sh3rf1Q69ZI1 Chrnd-202ENSMUST00000186373 2949 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Sh3rf1Q69ZI1 Slc25a37-201ENSMUST00000037064 4174 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sh3rf1Q69ZI1 Fam19a2-201ENSMUST00000050756 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sh3rf1Q69ZI1 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC14.22□□□□□ -0.13
Sh3rf1Q69ZI1 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sh3rf1Q69ZI1 Zfp146-201ENSMUST00000062181 2029 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sh3rf1Q69ZI1 Sipa1-202ENSMUST00000080824 3837 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sh3rf1Q69ZI1 Cad-206ENSMUST00000201838 3153 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Sh3rf1Q69ZI1 Hspb7-201ENSMUST00000102486 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sh3rf1Q69ZI1 Gm11405-201ENSMUST00000118689 1556 ntBASIC14.22□□□□□ -0.13
Sh3rf1Q69ZI1 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sh3rf1Q69ZI1 Emilin2-201ENSMUST00000024849 3910 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sh3rf1Q69ZI1 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Sh3rf1Q69ZI1 Wac-201ENSMUST00000074919 3070 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Sh3rf1Q69ZI1 Hapln4-201ENSMUST00000007738 3648 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Sh3rf1Q69ZI1 Gm42893-201ENSMUST00000198035 1502 ntTSL 3 BASIC14.21□□□□□ -0.13
Sh3rf1Q69ZI1 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Sh3rf1Q69ZI1 Col25a1-201ENSMUST00000080335 2624 ntAPPRIS P4 TSL 5 BASIC14.21□□□□□ -0.13
Sh3rf1Q69ZI1 Gm26546-201ENSMUST00000181000 4276 ntTSL 5 BASIC14.21□□□□□ -0.13
Sh3rf1Q69ZI1 Gm44065-201ENSMUST00000203184 3527 ntBASIC14.21□□□□□ -0.13
Sh3rf1Q69ZI1 Myog-201ENSMUST00000027730 1495 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Sh3rf1Q69ZI1 B3gnt8-201ENSMUST00000076034 1463 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Sh3rf1Q69ZI1 Ints3-202ENSMUST00000071488 4038 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Sh3rf1Q69ZI1 Spata5-209ENSMUST00000198968 2916 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Sh3rf1Q69ZI1 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Sh3rf1Q69ZI1 Gm25287-201ENSMUST00000103846 110 ntBASIC14.21□□□□□ -0.13
Sh3rf1Q69ZI1 Gm22918-201ENSMUST00000103855 110 ntBASIC14.21□□□□□ -0.13
Sh3rf1Q69ZI1 Ninj2-202ENSMUST00000112711 853 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Sh3rf1Q69ZI1 Pam16-201ENSMUST00000014445 596 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Sh3rf1Q69ZI1 Olfr1344-201ENSMUST00000168341 1061 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Sh3rf1Q69ZI1 Gm35911-201ENSMUST00000198837 677 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Sh3rf1Q69ZI1 Gm5626-201ENSMUST00000222151 1058 ntBASIC14.21□□□□□ -0.13
Sh3rf1Q69ZI1 Gm14168-201ENSMUST00000144818 2197 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Sh3rf1Q69ZI1 Llgl2-212ENSMUST00000177736 3612 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
Sh3rf1Q69ZI1 Csk-209ENSMUST00000217314 2162 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Sh3rf1Q69ZI1 Rbm33-201ENSMUST00000030920 3955 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Sh3rf1Q69ZI1 Chac1-201ENSMUST00000028780 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Sh3rf1Q69ZI1 Sytl1-201ENSMUST00000030674 1951 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Sh3rf1Q69ZI1 Gm14812-201ENSMUST00000156494 1794 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Sh3rf1Q69ZI1 Cog3-201ENSMUST00000049168 4222 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Sh3rf1Q69ZI1 Cant1-202ENSMUST00000092378 2995 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Sh3rf1Q69ZI1 Gpr108-201ENSMUST00000005975 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Sh3rf1Q69ZI1 Ap2m1-201ENSMUST00000007216 2937 ntAPPRIS P3 TSL 5 BASIC14.21□□□□□ -0.14
Sh3rf1Q69ZI1 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Sh3rf1Q69ZI1 Nkx6-3-201ENSMUST00000071588 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Sh3rf1Q69ZI1 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Sh3rf1Q69ZI1 Gga3-202ENSMUST00000106508 3582 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Sh3rf1Q69ZI1 Gm37844-201ENSMUST00000192473 4097 ntBASIC14.2□□□□□ -0.14
Sh3rf1Q69ZI1 Pcdha11-201ENSMUST00000115658 5359 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sh3rf1Q69ZI1 Psmc5-201ENSMUST00000021049 1316 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sh3rf1Q69ZI1 AC159621.2-201ENSMUST00000223519 1326 ntBASIC14.2□□□□□ -0.14
Sh3rf1Q69ZI1 Btrc-201ENSMUST00000065601 2978 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sh3rf1Q69ZI1 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Sh3rf1Q69ZI1 Krt26-201ENSMUST00000100482 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sh3rf1Q69ZI1 Cacnb4-201ENSMUST00000078324 8225 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Sh3rf1Q69ZI1 Myocd-202ENSMUST00000102635 4935 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sh3rf1Q69ZI1 Brsk2-204ENSMUST00000105989 2149 ntAPPRIS P4 TSL 5 BASIC14.2□□□□□ -0.14
Sh3rf1Q69ZI1 Sema6c-203ENSMUST00000107217 3595 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Sh3rf1Q69ZI1 Tmem169-201ENSMUST00000027380 2928 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sh3rf1Q69ZI1 Muc20-201ENSMUST00000041123 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sh3rf1Q69ZI1 Fut9-202ENSMUST00000108199 2579 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sh3rf1Q69ZI1 Tjap1-202ENSMUST00000164342 2559 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sh3rf1Q69ZI1 Itgb3-201ENSMUST00000021028 5784 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sh3rf1Q69ZI1 Pnrc2-201ENSMUST00000030436 1919 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sh3rf1Q69ZI1 4930500L23Rik-201ENSMUST00000198000 747 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 92.5 ms