Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
Rfx1P48377 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC16.73■□□□□ 0.27
Rfx1P48377 Gm27920-201ENSMUST00000183953 96 ntBASIC16.73■□□□□ 0.27
Rfx1P48377 Gm28659-201ENSMUST00000188013 759 ntBASIC16.73■□□□□ 0.27
Rfx1P48377 Gm44596-201ENSMUST00000204223 647 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
Rfx1P48377 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC16.73■□□□□ 0.27
Rfx1P48377 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
Rfx1P48377 Gm10819-201ENSMUST00000099988 561 ntBASIC16.73■□□□□ 0.27
Rfx1P48377 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rfx1P48377 Pomt2-201ENSMUST00000037788 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rfx1P48377 Tnfrsf21-201ENSMUST00000024708 3626 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rfx1P48377 Diaph1-204ENSMUST00000115631 5741 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
Rfx1P48377 Pcdh10-201ENSMUST00000166126 7081 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Rfx1P48377 Fbxo41-202ENSMUST00000161078 6562 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rfx1P48377 Cd34-202ENSMUST00000110815 2554 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Rfx1P48377 Slc7a7-206ENSMUST00000197440 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Rfx1P48377 AI480526-202ENSMUST00000159637 1697 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Rfx1P48377 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Rfx1P48377 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Rfx1P48377 Zfpm2-201ENSMUST00000053467 4974 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Rfx1P48377 Setd1b-204ENSMUST00000163030 8857 ntAPPRIS P2 TSL 5 BASIC16.72■□□□□ 0.27
Rfx1P48377 Pou2f2-209ENSMUST00000175774 7047 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Rfx1P48377 Cxcl16-201ENSMUST00000019064 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Rfx1P48377 Dnajc2-202ENSMUST00000115192 1132 ntTSL 2 BASIC16.72■□□□□ 0.27
Rfx1P48377 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC16.72■□□□□ 0.27
Rfx1P48377 AC154222.1-201ENSMUST00000223882 475 ntBASIC16.72■□□□□ 0.27
Rfx1P48377 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Rfx1P48377 Dpysl4-202ENSMUST00000121184 2727 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Rfx1P48377 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Rfx1P48377 Nat8f6-202ENSMUST00000174143 1571 ntAPPRIS P1 TSL 3 BASIC16.72■□□□□ 0.27
Rfx1P48377 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC16.72■□□□□ 0.27
Rfx1P48377 Nkx6-3-201ENSMUST00000071588 2238 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Rfx1P48377 Slc52a3-202ENSMUST00000109858 2094 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Rfx1P48377 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Rfx1P48377 Ap2a1-204ENSMUST00000167930 3376 ntTSL 5 BASIC16.71■□□□□ 0.27
Rfx1P48377 Malt1-202ENSMUST00000224056 4028 ntAPPRIS ALT2 BASIC16.71■□□□□ 0.27
Rfx1P48377 Gm6756-201ENSMUST00000180647 1620 ntBASIC16.71■□□□□ 0.27
Rfx1P48377 Dcaf11-204ENSMUST00000121622 2379 ntAPPRIS P2 TSL 5 BASIC16.71■□□□□ 0.27
Rfx1P48377 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC16.71■□□□□ 0.27
Rfx1P48377 Eif1ad-201ENSMUST00000025759 2469 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Rfx1P48377 Hectd1-202ENSMUST00000179265 9012 ntTSL 5 BASIC16.71■□□□□ 0.27
Rfx1P48377 Asb3-206ENSMUST00000203878 1813 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
Rfx1P48377 Mbp-207ENSMUST00000114674 2108 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Rfx1P48377 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC16.71■□□□□ 0.27
Rfx1P48377 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC16.71■□□□□ 0.27
Rfx1P48377 Gm40493-201ENSMUST00000210223 400 ntTSL 3 BASIC16.71■□□□□ 0.27
Rfx1P48377 Ndufv3-202ENSMUST00000064798 485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Rfx1P48377 Nkain3-201ENSMUST00000102998 3098 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Rfx1P48377 Luc7l3-202ENSMUST00000107820 3478 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
Rfx1P48377 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Rfx1P48377 4833439L19Rik-201ENSMUST00000026989 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Rfx1P48377 4921504A21Rik-201ENSMUST00000180594 2156 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Rfx1P48377 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Rfx1P48377 Pou4f3-201ENSMUST00000025374 2360 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
Rfx1P48377 Tcirg1-201ENSMUST00000001801 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
Rfx1P48377 Rap1gap2-202ENSMUST00000102521 6565 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.26
Rfx1P48377 Slc4a5-201ENSMUST00000039212 5123 ntAPPRIS P2 TSL 5 BASIC16.71■□□□□ 0.26
Rfx1P48377 Wnk1-203ENSMUST00000088644 11330 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.26
Rfx1P48377 Ube3a-216ENSMUST00000202945 3889 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
Rfx1P48377 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Rfx1P48377 Tbc1d22a-201ENSMUST00000063414 3229 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Rfx1P48377 Tmprss11d-202ENSMUST00000122377 2256 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Rfx1P48377 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Rfx1P48377 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Rfx1P48377 E230013L22Rik-201ENSMUST00000180408 1856 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Rfx1P48377 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC16.7■□□□□ 0.26
Rfx1P48377 Heg1-205ENSMUST00000152782 8161 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Rfx1P48377 Tmem101-201ENSMUST00000021296 1574 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Rfx1P48377 5830487J09Rik-201ENSMUST00000198600 1256 ntTSL 5 BASIC16.7■□□□□ 0.26
Rfx1P48377 Chp1-201ENSMUST00000014221 2609 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Rfx1P48377 Ctsa-203ENSMUST00000103093 2534 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Rfx1P48377 Gnb4-201ENSMUST00000108234 2510 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Rfx1P48377 Ciart-202ENSMUST00000159739 1939 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Rfx1P48377 Mcf2l-207ENSMUST00000110876 5253 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Rfx1P48377 Mfap4-202ENSMUST00000064783 1722 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Rfx1P48377 Klhl15-201ENSMUST00000096369 3944 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Rfx1P48377 Ube2k-210ENSMUST00000202679 4682 ntTSL 5 BASIC16.7■□□□□ 0.26
Rfx1P48377 Gm26777-201ENSMUST00000181852 2573 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Rfx1P48377 Acin1-216ENSMUST00000141453 2381 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Rfx1P48377 Slc6a21-206ENSMUST00000210861 2838 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
Rfx1P48377 Ptgdr2-201ENSMUST00000037261 2644 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Rfx1P48377 Amdhd2-201ENSMUST00000040735 1496 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Rfx1P48377 Mettl3-201ENSMUST00000022767 2025 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Rfx1P48377 Tmem200a-201ENSMUST00000066049 4115 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Rfx1P48377 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Rfx1P48377 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC16.69■□□□□ 0.26
Rfx1P48377 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC16.69■□□□□ 0.26
Rfx1P48377 Pcp2-205ENSMUST00000142431 524 ntTSL 2 BASIC16.69■□□□□ 0.26
Rfx1P48377 Rpl26-206ENSMUST00000167436 606 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Rfx1P48377 Tpd52l1-202ENSMUST00000213528 969 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Rfx1P48377 AC131187.1-201ENSMUST00000224567 809 ntBASIC16.69■□□□□ 0.26
Rfx1P48377 Hnrnph1-203ENSMUST00000109142 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Rfx1P48377 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
Rfx1P48377 A530013C23Rik-201ENSMUST00000130679 2555 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Rfx1P48377 Prn-201ENSMUST00000124100 2132 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
Rfx1P48377 Gm34376-201ENSMUST00000218529 2107 ntTSL 5 BASIC16.69■□□□□ 0.26
Rfx1P48377 4930556M19Rik-201ENSMUST00000180604 2468 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Rfx1P48377 Nfic-202ENSMUST00000078185 3163 ntTSL 5 BASIC16.69■□□□□ 0.26
Rfx1P48377 Kcnj3-203ENSMUST00000112633 1679 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Rfx1P48377 Pard3b-202ENSMUST00000075374 8392 ntAPPRIS P2 TSL 5 BASIC16.69■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 25 ms