Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Sostdc1-201ENSMUST00000041407 1781 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Cdx2P43241 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
Cdx2P43241 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
Cdx2P43241 Rnf207-201ENSMUST00000076183 2466 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Cdx2P43241 Gm13075-202ENSMUST00000149247 1621 ntTSL 5 BASIC13.24□□□□□ -0.29
Cdx2P43241 Slc12a5-207ENSMUST00000202223 5690 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Cdx2P43241 Zfp316-202ENSMUST00000161448 6891 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Cdx2P43241 Rsbn1-202ENSMUST00000068879 6712 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Cdx2P43241 Gm36445-201ENSMUST00000209344 1432 ntTSL 5 BASIC13.24□□□□□ -0.29
Cdx2P43241 AC153938.1-201ENSMUST00000220354 1425 ntTSL 5 BASIC13.24□□□□□ -0.29
Cdx2P43241 Map2k7-202ENSMUST00000062686 3525 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Cdx2P43241 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Cdx2P43241 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Cdx2P43241 Pkig-203ENSMUST00000109400 1059 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Cdx2P43241 Gm2639-201ENSMUST00000156881 1297 ntBASIC13.24□□□□□ -0.29
Cdx2P43241 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC13.24□□□□□ -0.29
Cdx2P43241 Calhm3-201ENSMUST00000178630 1044 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
Cdx2P43241 Gm27514-201ENSMUST00000183692 110 ntBASIC13.24□□□□□ -0.29
Cdx2P43241 1700113H08Rik-202ENSMUST00000189456 974 ntTSL 5 BASIC13.24□□□□□ -0.29
Cdx2P43241 4930502C17Rik-201ENSMUST00000200282 948 ntBASIC13.24□□□□□ -0.29
Cdx2P43241 Gm42550-201ENSMUST00000201553 960 ntBASIC13.24□□□□□ -0.29
Cdx2P43241 Gm4971-201ENSMUST00000205991 1108 ntBASIC13.24□□□□□ -0.29
Cdx2P43241 Gm18473-201ENSMUST00000220543 868 ntBASIC13.24□□□□□ -0.29
Cdx2P43241 Ankhd1-214ENSMUST00000155329 8223 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
Cdx2P43241 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC13.24□□□□□ -0.29
Cdx2P43241 AC121801.1-201ENSMUST00000225363 1899 ntBASIC13.24□□□□□ -0.29
Cdx2P43241 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Cdx2P43241 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Cdx2P43241 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Cdx2P43241 Gm6159-201ENSMUST00000191249 1724 ntBASIC13.24□□□□□ -0.29
Cdx2P43241 Camkv-201ENSMUST00000035700 3277 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Cdx2P43241 Maged2-203ENSMUST00000112699 2183 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Cdx2P43241 Rbm15-201ENSMUST00000061772 4343 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Cdx2P43241 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Cdx2P43241 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Cdx2P43241 Spryd3-203ENSMUST00000154032 2456 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
Cdx2P43241 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC13.23□□□□□ -0.29
Cdx2P43241 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
Cdx2P43241 Nfyc-201ENSMUST00000043429 1932 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Cdx2P43241 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Cdx2P43241 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Cdx2P43241 Ctgf-201ENSMUST00000020171 2398 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Cdx2P43241 Apbb1-215ENSMUST00000190369 1882 ntTSL 5 BASIC13.23□□□□□ -0.29
Cdx2P43241 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Cdx2P43241 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC13.23□□□□□ -0.29
Cdx2P43241 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC13.23□□□□□ -0.29
Cdx2P43241 Gm15635-202ENSMUST00000131160 917 ntTSL 3 BASIC13.23□□□□□ -0.29
Cdx2P43241 Mb-202ENSMUST00000166179 1056 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Cdx2P43241 Mb-203ENSMUST00000169226 1106 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Cdx2P43241 Gm29741-201ENSMUST00000192667 421 ntBASIC13.23□□□□□ -0.29
Cdx2P43241 1600017P15Rik-202ENSMUST00000193960 890 ntBASIC13.23□□□□□ -0.29
Cdx2P43241 Gm8598-201ENSMUST00000221184 836 ntBASIC13.23□□□□□ -0.29
Cdx2P43241 Gm9257-201ENSMUST00000221254 232 ntBASIC13.23□□□□□ -0.29
Cdx2P43241 CT030704.2-201ENSMUST00000228887 494 ntBASIC13.23□□□□□ -0.29
Cdx2P43241 Rrp36-201ENSMUST00000024766 1195 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Cdx2P43241 Ambp-201ENSMUST00000030041 1268 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Cdx2P43241 Gemin7-201ENSMUST00000051364 763 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Cdx2P43241 Ppil3-201ENSMUST00000081677 896 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Cdx2P43241 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Cdx2P43241 Cfp-201ENSMUST00000001156 1636 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Cdx2P43241 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Cdx2P43241 Ckmt1-202ENSMUST00000078222 1518 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Cdx2P43241 Fbxl19-201ENSMUST00000033081 3410 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Cdx2P43241 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Cdx2P43241 Cadm3-202ENSMUST00000111220 5155 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Cdx2P43241 Dlg4-204ENSMUST00000108589 3271 ntTSL 5 BASIC13.23□□□□□ -0.29
Cdx2P43241 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cdx2P43241 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Cdx2P43241 Cacna1g-201ENSMUST00000021234 8139 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
Cdx2P43241 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
Cdx2P43241 Gm13034-201ENSMUST00000121342 3177 ntBASIC13.22□□□□□ -0.29
Cdx2P43241 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cdx2P43241 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Cdx2P43241 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cdx2P43241 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
Cdx2P43241 Ifi35-201ENSMUST00000010502 1362 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cdx2P43241 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cdx2P43241 Chia1-201ENSMUST00000079132 1681 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cdx2P43241 Adamts2-201ENSMUST00000040523 7266 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cdx2P43241 Gm9347-201ENSMUST00000211473 1607 ntBASIC13.22□□□□□ -0.29
Cdx2P43241 Myh14-204ENSMUST00000207775 6499 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
Cdx2P43241 Mir698-201ENSMUST00000102164 109 ntBASIC13.22□□□□□ -0.29
Cdx2P43241 Cabp5-202ENSMUST00000117400 1258 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Cdx2P43241 Gm15444-201ENSMUST00000148335 388 ntTSL 5 BASIC13.22□□□□□ -0.29
Cdx2P43241 Gm6152-201ENSMUST00000151704 340 ntBASIC13.22□□□□□ -0.29
Cdx2P43241 Gm8810-201ENSMUST00000172895 754 ntBASIC13.22□□□□□ -0.29
Cdx2P43241 Gm20083-202ENSMUST00000206663 1008 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Cdx2P43241 AC144543.1-201ENSMUST00000221840 1064 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Cdx2P43241 Tmem86b-201ENSMUST00000055085 1222 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cdx2P43241 Gm5161-201ENSMUST00000075243 853 ntBASIC13.22□□□□□ -0.29
Cdx2P43241 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
Cdx2P43241 Zfp606-201ENSMUST00000098822 4748 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cdx2P43241 Per3-201ENSMUST00000103204 5999 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cdx2P43241 Cdh11-201ENSMUST00000075190 5647 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cdx2P43241 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cdx2P43241 Chd3-201ENSMUST00000092971 6066 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
Cdx2P43241 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cdx2P43241 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC13.22□□□□□ -0.29
Cdx2P43241 Gsdma3-201ENSMUST00000073295 1477 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cdx2P43241 Prrx1-202ENSMUST00000075805 4986 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 27.7 ms