Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Nudt1-203ENSMUST00000110825 599 ntTSL 2 BASIC12.1□□□□□ -0.47
Nkx3-1P97436 Apoc3-203ENSMUST00000121916 709 ntTSL 2 BASIC12.1□□□□□ -0.47
Nkx3-1P97436 Ankzf1-201ENSMUST00000127625 1167 ntTSL 5 BASIC12.1□□□□□ -0.47
Nkx3-1P97436 Rpl27a-203ENSMUST00000143107 1158 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Nkx3-1P97436 Mtmr2-209ENSMUST00000156801 617 ntTSL 5 BASIC12.1□□□□□ -0.47
Nkx3-1P97436 Krtap16-3-201ENSMUST00000179707 601 ntAPPRIS P1 BASIC12.1□□□□□ -0.47
Nkx3-1P97436 Gm29417-201ENSMUST00000188160 571 ntTSL 5 BASIC12.1□□□□□ -0.47
Nkx3-1P97436 Med10-201ENSMUST00000022089 913 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Nkx3-1P97436 Kcnk9-201ENSMUST00000044624 1209 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Nkx3-1P97436 Gm5356-201ENSMUST00000093326 615 ntBASIC12.1□□□□□ -0.47
Nkx3-1P97436 Elf4-202ENSMUST00000114958 6088 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Nkx3-1P97436 Dmrtc2-201ENSMUST00000011493 1619 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Nkx3-1P97436 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Nkx3-1P97436 Ptger1-201ENSMUST00000019608 4694 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Nkx3-1P97436 Gm4981-201ENSMUST00000099726 1854 ntAPPRIS P1 BASIC12.1□□□□□ -0.47
Nkx3-1P97436 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Nkx3-1P97436 Gm45504-201ENSMUST00000211407 2107 ntBASIC12.1□□□□□ -0.47
Nkx3-1P97436 Tex13b-201ENSMUST00000044179 2116 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Nkx3-1P97436 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Nkx3-1P97436 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Nkx3-1P97436 Cul5-209ENSMUST00000166367 5942 ntTSL 5 BASIC12.09□□□□□ -0.47
Nkx3-1P97436 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Nkx3-1P97436 Fbxo28-201ENSMUST00000051431 4925 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Nkx3-1P97436 Klhl33-204ENSMUST00000227271 5513 ntAPPRIS P1 BASIC12.09□□□□□ -0.47
Nkx3-1P97436 Brd7-201ENSMUST00000034085 3625 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Nkx3-1P97436 Cfap157-201ENSMUST00000102813 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Nkx3-1P97436 Akap17b-201ENSMUST00000051906 6003 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
Nkx3-1P97436 St8sia3-201ENSMUST00000025477 6282 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Nkx3-1P97436 Gm12620-201ENSMUST00000119791 1986 ntBASIC12.09□□□□□ -0.47
Nkx3-1P97436 Gm12612-201ENSMUST00000140182 1986 ntBASIC12.09□□□□□ -0.47
Nkx3-1P97436 Gm38058-201ENSMUST00000194323 4368 ntBASIC12.09□□□□□ -0.47
Nkx3-1P97436 Nfe2-205ENSMUST00000133600 1605 ntTSL 5 BASIC12.09□□□□□ -0.47
Nkx3-1P97436 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Nkx3-1P97436 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
Nkx3-1P97436 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC12.09□□□□□ -0.47
Nkx3-1P97436 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Nkx3-1P97436 Camk2d-204ENSMUST00000106400 2722 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
Nkx3-1P97436 Unc50-202ENSMUST00000114925 1094 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Nkx3-1P97436 Gm11425-201ENSMUST00000119608 498 ntBASIC12.09□□□□□ -0.47
Nkx3-1P97436 Rpl12-203ENSMUST00000126610 1242 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Nkx3-1P97436 Ift20-203ENSMUST00000128788 1141 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Nkx3-1P97436 Commd6-203ENSMUST00000168587 519 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Nkx3-1P97436 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Nkx3-1P97436 Ffar3-202ENSMUST00000185748 1234 ntAPPRIS P1 BASIC12.09□□□□□ -0.47
Nkx3-1P97436 Gm18905-201ENSMUST00000205454 928 ntBASIC12.09□□□□□ -0.47
Nkx3-1P97436 Gm18027-201ENSMUST00000218947 619 ntBASIC12.09□□□□□ -0.47
Nkx3-1P97436 Duoxa1-201ENSMUST00000028653 1026 ntAPPRIS P1 TSL 3 BASIC12.09□□□□□ -0.47
Nkx3-1P97436 Prss38-201ENSMUST00000061481 1243 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Nkx3-1P97436 Gm9396-201ENSMUST00000076703 567 ntBASIC12.09□□□□□ -0.47
Nkx3-1P97436 Sgce-207ENSMUST00000126151 1522 ntTSL 5 BASIC12.09□□□□□ -0.47
Nkx3-1P97436 Kcnq1-202ENSMUST00000185383 1535 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Nkx3-1P97436 Uhrf1bp1l-201ENSMUST00000020112 6448 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Nkx3-1P97436 Syncrip-209ENSMUST00000174361 1767 ntTSL 5 BASIC12.09□□□□□ -0.47
Nkx3-1P97436 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Nkx3-1P97436 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC12.09□□□□□ -0.47
Nkx3-1P97436 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Nkx3-1P97436 Col2a1-202ENSMUST00000088355 4862 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Nkx3-1P97436 Txnrd1-206ENSMUST00000219442 3531 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
Nkx3-1P97436 Gm36065-202ENSMUST00000219654 1424 ntTSL 5 BASIC12.09□□□□□ -0.47
Nkx3-1P97436 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Nkx3-1P97436 Dkk1-201ENSMUST00000025803 2427 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Nkx3-1P97436 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Nkx3-1P97436 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Nkx3-1P97436 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Nkx3-1P97436 Gpr137-205ENSMUST00000166115 1845 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Nkx3-1P97436 Dlg4-201ENSMUST00000018700 3204 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
Nkx3-1P97436 Slc38a1-201ENSMUST00000088452 7266 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Nkx3-1P97436 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.47
Nkx3-1P97436 Gnb4-201ENSMUST00000108234 2510 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Nkx3-1P97436 Phka1-201ENSMUST00000043596 5938 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Nkx3-1P97436 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC12.08□□□□□ -0.48
Nkx3-1P97436 Igf2os-203ENSMUST00000141681 4778 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Nkx3-1P97436 Carlr-201ENSMUST00000181515 2574 ntBASIC12.08□□□□□ -0.48
Nkx3-1P97436 Pcdha11-201ENSMUST00000115658 5359 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Nkx3-1P97436 Tbx3-201ENSMUST00000018748 4856 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Nkx3-1P97436 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Nkx3-1P97436 Stard5-201ENSMUST00000075418 2483 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Nkx3-1P97436 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
Nkx3-1P97436 Ins2-205ENSMUST00000105933 552 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Nkx3-1P97436 Ins2-206ENSMUST00000105934 480 ntAPPRIS P1 TSL 3 BASIC12.08□□□□□ -0.48
Nkx3-1P97436 Rab1a-202ENSMUST00000109601 1200 ntTSL 5 BASIC12.08□□□□□ -0.48
Nkx3-1P97436 AC139350.3-201ENSMUST00000226151 420 ntBASIC12.08□□□□□ -0.48
Nkx3-1P97436 AC102291.3-201ENSMUST00000226566 405 ntBASIC12.08□□□□□ -0.48
Nkx3-1P97436 Ngf-201ENSMUST00000035952 904 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.48
Nkx3-1P97436 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Nkx3-1P97436 Rpsa-ps10-201ENSMUST00000057740 885 ntBASIC12.08□□□□□ -0.48
Nkx3-1P97436 Atp5h-202ENSMUST00000073791 659 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
Nkx3-1P97436 Alkbh7-202ENSMUST00000074141 736 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Nkx3-1P97436 Gm10244-201ENSMUST00000090237 830 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Nkx3-1P97436 Ces2f-201ENSMUST00000076384 1823 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Nkx3-1P97436 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
Nkx3-1P97436 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
Nkx3-1P97436 Map3k8-201ENSMUST00000025078 2507 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Nkx3-1P97436 Otud4-203ENSMUST00000173286 7213 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Nkx3-1P97436 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Nkx3-1P97436 Cadps2-204ENSMUST00000115356 3533 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Nkx3-1P97436 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Nkx3-1P97436 B3gntl1-201ENSMUST00000062654 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Nkx3-1P97436 Cep164-204ENSMUST00000213154 6105 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
Nkx3-1P97436 Ss18l1-201ENSMUST00000041126 4343 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 61.5 ms