Protein–RNA interactions for Protein: P59708

Sf3b6, Splicing factor 3B subunit 6, mousemouse

Known RBP Predictions only

Length 125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b6P59708 Prss36-201ENSMUST00000094026 3061 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
Sf3b6P59708 Atxn7l1-202ENSMUST00000090597 2563 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Sf3b6P59708 Calcr-203ENSMUST00000168592 2064 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
Sf3b6P59708 Got1-201ENSMUST00000026196 2058 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sf3b6P59708 Ttc5-201ENSMUST00000006451 1842 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sf3b6P59708 Rest-202ENSMUST00000113449 6924 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sf3b6P59708 Map2k7-206ENSMUST00000110998 3497 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sf3b6P59708 Pcdha11-201ENSMUST00000115658 5359 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sf3b6P59708 Gcfc2-201ENSMUST00000043195 4192 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sf3b6P59708 2900005J15Rik-202ENSMUST00000171190 2025 ntBASIC12.44□□□□□ -0.42
Sf3b6P59708 Rpusd2-201ENSMUST00000028796 2706 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sf3b6P59708 Gpr132-201ENSMUST00000021729 2478 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sf3b6P59708 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sf3b6P59708 Ptbp2-201ENSMUST00000029780 3364 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sf3b6P59708 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sf3b6P59708 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC12.44□□□□□ -0.42
Sf3b6P59708 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sf3b6P59708 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC12.44□□□□□ -0.42
Sf3b6P59708 Gm8000-201ENSMUST00000188378 592 ntBASIC12.44□□□□□ -0.42
Sf3b6P59708 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sf3b6P59708 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sf3b6P59708 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC12.44□□□□□ -0.42
Sf3b6P59708 Gm10154-201ENSMUST00000084445 354 ntBASIC12.44□□□□□ -0.42
Sf3b6P59708 Chfr-201ENSMUST00000014812 3146 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sf3b6P59708 Kpnb1-201ENSMUST00000001479 5894 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sf3b6P59708 Pias3-202ENSMUST00000107076 2858 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Sf3b6P59708 Rxrg-204ENSMUST00000111386 1705 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
Sf3b6P59708 Gm45638-201ENSMUST00000211507 2878 ntBASIC12.44□□□□□ -0.42
Sf3b6P59708 Magi1-208ENSMUST00000204347 7929 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sf3b6P59708 Cul7-201ENSMUST00000043464 5530 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sf3b6P59708 Ptprv-210ENSMUST00000183317 6108 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Sf3b6P59708 Lrrc29-203ENSMUST00000210412 2304 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
Sf3b6P59708 Ptgr2-208ENSMUST00000147363 1869 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Sf3b6P59708 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
Sf3b6P59708 Gm39377-201ENSMUST00000214587 2533 ntTSL 5 BASIC12.44□□□□□ -0.42
Sf3b6P59708 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Sf3b6P59708 Ccdc162-203ENSMUST00000099932 2742 ntTSL 5 BASIC12.44□□□□□ -0.42
Sf3b6P59708 Parp10-202ENSMUST00000165738 3367 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sf3b6P59708 Ric8b-202ENSMUST00000095385 2909 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sf3b6P59708 Tmem2-201ENSMUST00000025663 6585 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sf3b6P59708 Mei4-202ENSMUST00000189391 1817 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sf3b6P59708 Elfn2-201ENSMUST00000088592 4846 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sf3b6P59708 Camk2d-206ENSMUST00000106402 4180 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Sf3b6P59708 Hnf1b-203ENSMUST00000108114 2659 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Sf3b6P59708 Fhod3-201ENSMUST00000037097 5408 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sf3b6P59708 Spock3-202ENSMUST00000117377 3066 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sf3b6P59708 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC12.43□□□□□ -0.42
Sf3b6P59708 Nacad-201ENSMUST00000045713 4892 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sf3b6P59708 Adal-204ENSMUST00000110665 2356 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Sf3b6P59708 Hps3-202ENSMUST00000108321 3385 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Sf3b6P59708 Tmem251-201ENSMUST00000057416 3367 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sf3b6P59708 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sf3b6P59708 Dda1-206ENSMUST00000138892 1738 ntTSL 3 BASIC12.43□□□□□ -0.42
Sf3b6P59708 Pdxk-ps-201ENSMUST00000159650 2342 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Sf3b6P59708 Sdha-201ENSMUST00000022062 2900 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sf3b6P59708 Zbtb46-201ENSMUST00000029106 5309 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
Sf3b6P59708 Zkscan17-201ENSMUST00000013262 4064 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sf3b6P59708 Sim2-201ENSMUST00000072182 3670 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sf3b6P59708 Lrriq4-201ENSMUST00000108265 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sf3b6P59708 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sf3b6P59708 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
Sf3b6P59708 Dlk1-203ENSMUST00000109842 1129 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Sf3b6P59708 Gm13597-201ENSMUST00000121239 375 ntBASIC12.43□□□□□ -0.42
Sf3b6P59708 Gm12260-201ENSMUST00000122447 411 ntBASIC12.43□□□□□ -0.42
Sf3b6P59708 Dusp3-205ENSMUST00000143177 391 ntTSL 3 BASIC12.43□□□□□ -0.42
Sf3b6P59708 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC12.43□□□□□ -0.42
Sf3b6P59708 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sf3b6P59708 Gm27300-201ENSMUST00000184085 97 ntBASIC12.43□□□□□ -0.42
Sf3b6P59708 Gm27335-201ENSMUST00000184758 97 ntBASIC12.43□□□□□ -0.42
Sf3b6P59708 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Sf3b6P59708 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC12.43□□□□□ -0.42
Sf3b6P59708 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sf3b6P59708 2310002L09Rik-201ENSMUST00000030101 958 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sf3b6P59708 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sf3b6P59708 G0s2-201ENSMUST00000009777 871 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sf3b6P59708 Ebf1-202ENSMUST00000101326 3422 ntAPPRIS ALT1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sf3b6P59708 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
Sf3b6P59708 Hipk4-202ENSMUST00000108353 2409 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sf3b6P59708 Lmod3-201ENSMUST00000095655 2215 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sf3b6P59708 Cdca5-201ENSMUST00000025704 2024 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sf3b6P59708 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sf3b6P59708 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sf3b6P59708 Col4a1-201ENSMUST00000033898 6615 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sf3b6P59708 Sema4b-201ENSMUST00000032754 3949 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sf3b6P59708 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sf3b6P59708 Iqgap1-201ENSMUST00000167377 7444 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sf3b6P59708 Usp19-201ENSMUST00000006854 4791 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sf3b6P59708 Chst4-202ENSMUST00000211894 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sf3b6P59708 Hnrnpf-210ENSMUST00000180341 1922 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Sf3b6P59708 Rdh10-201ENSMUST00000027053 3587 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sf3b6P59708 Alx1-201ENSMUST00000040859 2493 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sf3b6P59708 Hdgfl2-201ENSMUST00000002911 2264 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sf3b6P59708 Tfap2c-202ENSMUST00000099058 2985 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Sf3b6P59708 Slc6a19os-201ENSMUST00000022049 1532 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Sf3b6P59708 Alkbh3os1-201ENSMUST00000028621 1549 ntTSL 5 BASIC12.42□□□□□ -0.42
Sf3b6P59708 Fgfr1-202ENSMUST00000117179 4046 ntAPPRIS ALT1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sf3b6P59708 Ptger3-201ENSMUST00000041175 3148 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sf3b6P59708 Spag1-201ENSMUST00000047348 3646 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sf3b6P59708 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sf3b6P59708 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC12.42□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 26 ms