Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Mir449b-201ENSMUST00000104833 80 ntBASIC13.34□□□□□ -0.27
Lire1P11260 Ropn1l-201ENSMUST00000110408 957 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Lire1P11260 Eef1akmt4-201ENSMUST00000115522 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Lire1P11260 Mmab-203ENSMUST00000123256 1277 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Lire1P11260 Haghl-207ENSMUST00000140738 1194 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Lire1P11260 Gm11788-201ENSMUST00000142520 562 ntTSL 3 BASIC13.34□□□□□ -0.27
Lire1P11260 Gm10499-201ENSMUST00000174094 934 ntBASIC13.34□□□□□ -0.27
Lire1P11260 Rpph1-201ENSMUST00000175096 319 ntBASIC13.34□□□□□ -0.27
Lire1P11260 4930448I06Rik-201ENSMUST00000194002 546 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Lire1P11260 Gm7556-201ENSMUST00000201178 1084 ntBASIC13.34□□□□□ -0.27
Lire1P11260 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC13.34□□□□□ -0.27
Lire1P11260 Gm20949-201ENSMUST00000206478 952 ntBASIC13.34□□□□□ -0.27
Lire1P11260 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC13.34□□□□□ -0.27
Lire1P11260 Plekhb1-201ENSMUST00000079176 2079 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Lire1P11260 Rnf14-202ENSMUST00000170811 2886 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Lire1P11260 Nub1-202ENSMUST00000197407 3546 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Lire1P11260 Syn2-201ENSMUST00000009538 2708 ntAPPRIS P4 TSL 1 (best) BASIC13.34□□□□□ -0.27
Lire1P11260 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Lire1P11260 Gm20708-201ENSMUST00000132298 1780 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
Lire1P11260 Ppt2-210ENSMUST00000171376 1750 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Lire1P11260 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Lire1P11260 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Lire1P11260 Bend3-201ENSMUST00000040147 5882 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Lire1P11260 AC157650.3-201ENSMUST00000225058 1476 ntBASIC13.34□□□□□ -0.27
Lire1P11260 Phka1-203ENSMUST00000113611 6064 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
Lire1P11260 Phka1-205ENSMUST00000120270 6064 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
Lire1P11260 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Lire1P11260 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Lire1P11260 Inpp5a-202ENSMUST00000097975 2301 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Lire1P11260 Rasd2-202ENSMUST00000139848 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Lire1P11260 Emc7-201ENSMUST00000069747 5826 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Lire1P11260 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Lire1P11260 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC13.34□□□□□ -0.27
Lire1P11260 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Lire1P11260 Myo19-202ENSMUST00000093969 4091 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Lire1P11260 Il2rb-202ENSMUST00000163494 1894 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Lire1P11260 Hoxd3os1-202ENSMUST00000139005 1701 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
Lire1P11260 Ppig-201ENSMUST00000040915 6245 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Lire1P11260 C77080-203ENSMUST00000106051 5049 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.27
Lire1P11260 C77080-202ENSMUST00000097873 5033 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.27
Lire1P11260 Fam198a-203ENSMUST00000214536 2789 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
Lire1P11260 C530008M17Rik-202ENSMUST00000120639 6826 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lire1P11260 Galnt4-201ENSMUST00000161240 5089 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
Lire1P11260 C530008M17Rik-211ENSMUST00000163347 6835 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lire1P11260 Fam19a2-201ENSMUST00000050756 4364 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lire1P11260 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Lire1P11260 Prrt3-202ENSMUST00000204134 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lire1P11260 Kcnk13-201ENSMUST00000049788 3078 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lire1P11260 Clstn2-202ENSMUST00000162295 4174 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
Lire1P11260 Gm25287-201ENSMUST00000103846 110 ntBASIC13.33□□□□□ -0.28
Lire1P11260 Gm22918-201ENSMUST00000103855 110 ntBASIC13.33□□□□□ -0.28
Lire1P11260 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lire1P11260 Gm43125-201ENSMUST00000201724 730 ntBASIC13.33□□□□□ -0.28
Lire1P11260 Gm20553-201ENSMUST00000204205 844 ntBASIC13.33□□□□□ -0.28
Lire1P11260 Gm18057-201ENSMUST00000208220 503 ntBASIC13.33□□□□□ -0.28
Lire1P11260 Mrpl4-201ENSMUST00000003386 1288 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lire1P11260 Foxj2-202ENSMUST00000177927 4620 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Lire1P11260 Ncald-211ENSMUST00000168992 3538 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Lire1P11260 Mynn-202ENSMUST00000192715 5555 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lire1P11260 Gpc6-201ENSMUST00000078849 1668 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lire1P11260 Tjap1-211ENSMUST00000225080 2412 ntAPPRIS P2 BASIC13.33□□□□□ -0.28
Lire1P11260 Gm38346-201ENSMUST00000192379 2639 ntBASIC13.33□□□□□ -0.28
Lire1P11260 Nif3l1-206ENSMUST00000171597 2098 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lire1P11260 Tmem37-201ENSMUST00000056089 1311 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lire1P11260 Aifm2-202ENSMUST00000080099 1329 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Lire1P11260 Cacna2d2-208ENSMUST00000170737 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lire1P11260 Gm28182-201ENSMUST00000188354 2477 ntBASIC13.33□□□□□ -0.28
Lire1P11260 Egr2-202ENSMUST00000105438 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lire1P11260 Spock3-203ENSMUST00000118003 2860 ntAPPRIS P3 TSL 5 BASIC13.33□□□□□ -0.28
Lire1P11260 Heg1-201ENSMUST00000126532 6714 ntAPPRIS P5 TSL 5 BASIC13.33□□□□□ -0.28
Lire1P11260 Stk38-202ENSMUST00000119274 1939 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lire1P11260 Akap17b-201ENSMUST00000051906 6003 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Lire1P11260 Nudt18-203ENSMUST00000228768 1578 ntBASIC13.32□□□□□ -0.28
Lire1P11260 Anxa3-201ENSMUST00000031447 1595 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Lire1P11260 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
Lire1P11260 AC126250.1-201ENSMUST00000228343 1768 ntBASIC13.32□□□□□ -0.28
Lire1P11260 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
Lire1P11260 Gm11839-201ENSMUST00000120647 1953 ntBASIC13.32□□□□□ -0.28
Lire1P11260 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Lire1P11260 Tuft1-203ENSMUST00000196655 2156 ntTSL 5 BASIC13.32□□□□□ -0.28
Lire1P11260 Atxn7l3b-201ENSMUST00000099276 3566 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
Lire1P11260 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC13.32□□□□□ -0.28
Lire1P11260 Proser1-201ENSMUST00000058577 4472 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Lire1P11260 Fbxo21-201ENSMUST00000035579 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Lire1P11260 Sema3d-201ENSMUST00000030868 6307 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Lire1P11260 Fbrs-202ENSMUST00000205432 4166 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Lire1P11260 Mettl14-201ENSMUST00000029759 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Lire1P11260 Dab1-203ENSMUST00000106830 5278 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Lire1P11260 Trim32-201ENSMUST00000050850 3194 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Lire1P11260 Gm22065-201ENSMUST00000103753 110 ntBASIC13.32□□□□□ -0.28
Lire1P11260 Gm22066-201ENSMUST00000103761 110 ntBASIC13.32□□□□□ -0.28
Lire1P11260 Gm24932-201ENSMUST00000103763 110 ntBASIC13.32□□□□□ -0.28
Lire1P11260 Gm24115-201ENSMUST00000103799 110 ntBASIC13.32□□□□□ -0.28
Lire1P11260 Gm22190-201ENSMUST00000103827 110 ntBASIC13.32□□□□□ -0.28
Lire1P11260 Gm22191-201ENSMUST00000103831 110 ntBASIC13.32□□□□□ -0.28
Lire1P11260 Gm24721-201ENSMUST00000103849 110 ntBASIC13.32□□□□□ -0.28
Lire1P11260 Gm28018-201ENSMUST00000103869 110 ntBASIC13.32□□□□□ -0.28
Lire1P11260 Gm26399-201ENSMUST00000103937 110 ntBASIC13.32□□□□□ -0.28
Lire1P11260 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Lire1P11260 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 34.9 ms