Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 AC026120.1-201ENST00000611536 926 ntBASIC18.15■□□□□ 0.5
SMIM28A0A1B0GU29 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
SMIM28A0A1B0GU29 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
SMIM28A0A1B0GU29 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC18.15■□□□□ 0.5
SMIM28A0A1B0GU29 AR-207ENST00000612010 3896 ntTSL 5 BASIC18.15■□□□□ 0.5
SMIM28A0A1B0GU29 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SMIM28A0A1B0GU29 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SMIM28A0A1B0GU29 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SMIM28A0A1B0GU29 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SMIM28A0A1B0GU29 TUBB8P12-201ENST00000308911 1335 ntBASIC18.15■□□□□ 0.5
SMIM28A0A1B0GU29 TUBB7P-202ENST00000428444 1305 ntBASIC18.15■□□□□ 0.5
SMIM28A0A1B0GU29 TUBB8P7-204ENST00000567960 1332 ntBASIC18.15■□□□□ 0.5
SMIM28A0A1B0GU29 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SMIM28A0A1B0GU29 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
SMIM28A0A1B0GU29 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SMIM28A0A1B0GU29 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC18.15■□□□□ 0.5
SMIM28A0A1B0GU29 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
SMIM28A0A1B0GU29 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC18.14■□□□□ 0.5
SMIM28A0A1B0GU29 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SMIM28A0A1B0GU29 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
SMIM28A0A1B0GU29 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
SMIM28A0A1B0GU29 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC18.14■□□□□ 0.49
SMIM28A0A1B0GU29 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SMIM28A0A1B0GU29 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SMIM28A0A1B0GU29 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC18.14■□□□□ 0.49
SMIM28A0A1B0GU29 TIMM8BP1-201ENST00000452384 211 ntBASIC18.14■□□□□ 0.49
SMIM28A0A1B0GU29 KRT8P48-201ENST00000515599 1220 ntBASIC18.14■□□□□ 0.49
SMIM28A0A1B0GU29 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC18.14■□□□□ 0.49
SMIM28A0A1B0GU29 CYP2A7P1-201ENST00000595391 815 ntBASIC18.14■□□□□ 0.49
SMIM28A0A1B0GU29 AC004835.2-201ENST00000603762 682 ntBASIC18.14■□□□□ 0.49
SMIM28A0A1B0GU29 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC18.14■□□□□ 0.49
SMIM28A0A1B0GU29 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
SMIM28A0A1B0GU29 AL161645.1-201ENST00000622716 1255 ntBASIC18.14■□□□□ 0.49
SMIM28A0A1B0GU29 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
SMIM28A0A1B0GU29 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
SMIM28A0A1B0GU29 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC18.14■□□□□ 0.49
SMIM28A0A1B0GU29 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SMIM28A0A1B0GU29 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC18.14■□□□□ 0.49
SMIM28A0A1B0GU29 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
SMIM28A0A1B0GU29 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC18.14■□□□□ 0.49
SMIM28A0A1B0GU29 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SMIM28A0A1B0GU29 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SMIM28A0A1B0GU29 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC18.13■□□□□ 0.49
SMIM28A0A1B0GU29 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC18.13■□□□□ 0.49
SMIM28A0A1B0GU29 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SMIM28A0A1B0GU29 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SMIM28A0A1B0GU29 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC18.13■□□□□ 0.49
SMIM28A0A1B0GU29 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
SMIM28A0A1B0GU29 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SMIM28A0A1B0GU29 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
SMIM28A0A1B0GU29 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SMIM28A0A1B0GU29 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC18.13■□□□□ 0.49
SMIM28A0A1B0GU29 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC18.13■□□□□ 0.49
SMIM28A0A1B0GU29 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC18.13■□□□□ 0.49
SMIM28A0A1B0GU29 TFAMP1-201ENST00000412727 736 ntBASIC18.13■□□□□ 0.49
SMIM28A0A1B0GU29 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC18.13■□□□□ 0.49
SMIM28A0A1B0GU29 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SMIM28A0A1B0GU29 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC18.13■□□□□ 0.49
SMIM28A0A1B0GU29 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC18.13■□□□□ 0.49
SMIM28A0A1B0GU29 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC18.13■□□□□ 0.49
SMIM28A0A1B0GU29 AL031055.1-201ENST00000606362 631 ntBASIC18.13■□□□□ 0.49
SMIM28A0A1B0GU29 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SMIM28A0A1B0GU29 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
SMIM28A0A1B0GU29 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC18.13■□□□□ 0.49
SMIM28A0A1B0GU29 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC18.13■□□□□ 0.49
SMIM28A0A1B0GU29 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
SMIM28A0A1B0GU29 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC18.13■□□□□ 0.49
SMIM28A0A1B0GU29 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SMIM28A0A1B0GU29 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SMIM28A0A1B0GU29 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SMIM28A0A1B0GU29 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC18.13■□□□□ 0.49
SMIM28A0A1B0GU29 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
SMIM28A0A1B0GU29 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
SMIM28A0A1B0GU29 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC18.12■□□□□ 0.49
SMIM28A0A1B0GU29 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SMIM28A0A1B0GU29 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
SMIM28A0A1B0GU29 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SMIM28A0A1B0GU29 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SMIM28A0A1B0GU29 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
SMIM28A0A1B0GU29 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
SMIM28A0A1B0GU29 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC18.12■□□□□ 0.49
SMIM28A0A1B0GU29 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
SMIM28A0A1B0GU29 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SMIM28A0A1B0GU29 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SMIM28A0A1B0GU29 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SMIM28A0A1B0GU29 METTL21AP1-201ENST00000438852 635 ntBASIC18.12■□□□□ 0.49
SMIM28A0A1B0GU29 SPDYE11-202ENST00000450699 704 ntBASIC18.12■□□□□ 0.49
SMIM28A0A1B0GU29 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SMIM28A0A1B0GU29 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SMIM28A0A1B0GU29 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC18.12■□□□□ 0.49
SMIM28A0A1B0GU29 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC18.12■□□□□ 0.49
SMIM28A0A1B0GU29 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
SMIM28A0A1B0GU29 AC243562.1-201ENST00000560672 389 ntBASIC18.12■□□□□ 0.49
SMIM28A0A1B0GU29 RARRES2P8-201ENST00000566335 367 ntBASIC18.12■□□□□ 0.49
SMIM28A0A1B0GU29 SPDYE9P-201ENST00000570642 692 ntBASIC18.12■□□□□ 0.49
SMIM28A0A1B0GU29 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SMIM28A0A1B0GU29 SPDYE10P-202ENST00000612005 668 ntBASIC18.12■□□□□ 0.49
SMIM28A0A1B0GU29 SPDYE8P-202ENST00000612377 668 ntBASIC18.12■□□□□ 0.49
SMIM28A0A1B0GU29 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC18.12■□□□□ 0.49
SMIM28A0A1B0GU29 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms