Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Sirpa-214ENSMUST00000179001 3812 ntAPPRIS P3 TSL 5 BASIC16.9■□□□□ 0.3
Ccdc9Q8VC31 Chml-201ENSMUST00000104984 6905 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
Ccdc9Q8VC31 Chml-202ENSMUST00000209720 6905 ntTSL 5 BASIC16.9■□□□□ 0.3
Ccdc9Q8VC31 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ccdc9Q8VC31 Tcf12-218ENSMUST00000184783 3489 ntAPPRIS P3 TSL 5 BASIC16.9■□□□□ 0.3
Ccdc9Q8VC31 Qrfp-201ENSMUST00000057407 2927 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ccdc9Q8VC31 Cd33-202ENSMUST00000039861 1791 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.3
Ccdc9Q8VC31 Ptpn7-203ENSMUST00000187985 1990 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.3
Ccdc9Q8VC31 Reln-201ENSMUST00000062372 10885 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.3
Ccdc9Q8VC31 Dpp9-201ENSMUST00000038794 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
Ccdc9Q8VC31 Ripor3-201ENSMUST00000099073 3580 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
Ccdc9Q8VC31 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ccdc9Q8VC31 4933427G23Rik-201ENSMUST00000122963 2515 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Ccdc9Q8VC31 Fbf1-201ENSMUST00000103031 5252 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
Ccdc9Q8VC31 Gm44086-201ENSMUST00000203251 2349 ntBASIC16.89■□□□□ 0.29
Ccdc9Q8VC31 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ccdc9Q8VC31 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ccdc9Q8VC31 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ccdc9Q8VC31 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ccdc9Q8VC31 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC16.89■□□□□ 0.29
Ccdc9Q8VC31 Gm7977-201ENSMUST00000193787 748 ntBASIC16.89■□□□□ 0.29
Ccdc9Q8VC31 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Ccdc9Q8VC31 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
Ccdc9Q8VC31 AC114585.2-202ENSMUST00000228094 426 ntBASIC16.89■□□□□ 0.29
Ccdc9Q8VC31 AC130713.1-201ENSMUST00000228853 1096 ntBASIC16.89■□□□□ 0.29
Ccdc9Q8VC31 Hvcn1-201ENSMUST00000072602 2790 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ccdc9Q8VC31 Pbx1-205ENSMUST00000176540 6876 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ccdc9Q8VC31 Dda1-206ENSMUST00000138892 1738 ntTSL 3 BASIC16.89■□□□□ 0.29
Ccdc9Q8VC31 Gfra1-203ENSMUST00000129100 4415 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Ccdc9Q8VC31 Hadhb-203ENSMUST00000114786 2048 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ccdc9Q8VC31 Me2-201ENSMUST00000025439 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ccdc9Q8VC31 Srms-201ENSMUST00000016498 2562 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc9Q8VC31 Bcl7a-201ENSMUST00000031391 4718 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc9Q8VC31 Rab11fip3-203ENSMUST00000122103 5015 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc9Q8VC31 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC16.88■□□□□ 0.29
Ccdc9Q8VC31 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc9Q8VC31 Nrd1-202ENSMUST00000102736 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc9Q8VC31 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc9Q8VC31 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
Ccdc9Q8VC31 Gm17435-202ENSMUST00000212699 1998 ntBASIC16.88■□□□□ 0.29
Ccdc9Q8VC31 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc9Q8VC31 Vit-201ENSMUST00000024880 2720 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc9Q8VC31 Klhl26-205ENSMUST00000210250 2974 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc9Q8VC31 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc9Q8VC31 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc9Q8VC31 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC16.88■□□□□ 0.29
Ccdc9Q8VC31 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc9Q8VC31 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
Ccdc9Q8VC31 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
Ccdc9Q8VC31 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc9Q8VC31 Vcpip1-201ENSMUST00000057438 9749 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc9Q8VC31 Nup205-204ENSMUST00000201374 6411 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc9Q8VC31 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc9Q8VC31 Wls-205ENSMUST00000198878 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc9Q8VC31 Rnf167-201ENSMUST00000037534 1833 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc9Q8VC31 Ptk2-201ENSMUST00000110036 4184 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc9Q8VC31 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc9Q8VC31 Sass6-206ENSMUST00000198386 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc9Q8VC31 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc9Q8VC31 Plin3-201ENSMUST00000019726 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc9Q8VC31 Rasgrp4-214ENSMUST00000205027 2717 ntTSL 5 BASIC16.88■□□□□ 0.29
Ccdc9Q8VC31 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
Ccdc9Q8VC31 Tbx4-201ENSMUST00000000096 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc9Q8VC31 Tmem181a-201ENSMUST00000088940 4405 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc9Q8VC31 Sbsn-201ENSMUST00000080518 2221 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc9Q8VC31 Csf1-202ENSMUST00000118593 3058 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc9Q8VC31 Foxl2os-201ENSMUST00000181706 3095 ntTSL 2 BASIC16.88■□□□□ 0.29
Ccdc9Q8VC31 Pnkd-203ENSMUST00000087226 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc9Q8VC31 Ptbp2-201ENSMUST00000029780 3364 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ccdc9Q8VC31 Crhr2-208ENSMUST00000212633 2041 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Ccdc9Q8VC31 Hcls1-201ENSMUST00000023531 2016 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ccdc9Q8VC31 Wapl-205ENSMUST00000169910 4066 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ccdc9Q8VC31 Celf1-202ENSMUST00000068726 7851 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Ccdc9Q8VC31 Slc44a1-204ENSMUST00000107647 2176 ntTSL 2 BASIC16.87■□□□□ 0.29
Ccdc9Q8VC31 Gm26616-202ENSMUST00000195676 3107 ntBASIC16.87■□□□□ 0.29
Ccdc9Q8VC31 Nphs2-201ENSMUST00000027896 3116 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ccdc9Q8VC31 Gm9889-202ENSMUST00000206983 1577 ntBASIC16.87■□□□□ 0.29
Ccdc9Q8VC31 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Ccdc9Q8VC31 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ccdc9Q8VC31 Gm15794-201ENSMUST00000120182 631 ntBASIC16.87■□□□□ 0.29
Ccdc9Q8VC31 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ccdc9Q8VC31 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
Ccdc9Q8VC31 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ccdc9Q8VC31 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ccdc9Q8VC31 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ccdc9Q8VC31 Gm5939-201ENSMUST00000119613 2874 ntBASIC16.87■□□□□ 0.29
Ccdc9Q8VC31 Zfp444-204ENSMUST00000108567 5104 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ccdc9Q8VC31 Gm38102-201ENSMUST00000192791 1935 ntBASIC16.87■□□□□ 0.29
Ccdc9Q8VC31 Ntsr1-202ENSMUST00000170448 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ccdc9Q8VC31 Eps8l1-214ENSMUST00000171445 2975 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
Ccdc9Q8VC31 Nr3c1-201ENSMUST00000025300 4989 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ccdc9Q8VC31 Eps15l1-203ENSMUST00000212121 2686 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Ccdc9Q8VC31 Gtf3c5-201ENSMUST00000028157 2739 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ccdc9Q8VC31 Slc4a1ap-209ENSMUST00000202214 2806 ntAPPRIS P3 TSL 5 BASIC16.87■□□□□ 0.29
Ccdc9Q8VC31 2900089D17Rik-201ENSMUST00000124015 2475 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Ccdc9Q8VC31 Ctsa-203ENSMUST00000103093 2534 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ccdc9Q8VC31 Minos1-203ENSMUST00000143971 2549 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ccdc9Q8VC31 Olfm2-201ENSMUST00000034692 1836 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ccdc9Q8VC31 Tfe3-204ENSMUST00000115677 2943 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Ccdc9Q8VC31 Lsm14b-202ENSMUST00000058764 2566 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 32.2 ms