Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Tex13a-201ENSMUST00000096314 1317 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Ptchd3Q0EEE2 Camk2b-208ENSMUST00000109812 1875 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Ptchd3Q0EEE2 Zmym3-208ENSMUST00000121429 1890 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Ptchd3Q0EEE2 Ptger3-201ENSMUST00000041175 3148 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Ptchd3Q0EEE2 Spsb1-203ENSMUST00000105685 1537 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Ptchd3Q0EEE2 Gnas-210ENSMUST00000109095 2059 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Ptchd3Q0EEE2 Ggt7-201ENSMUST00000029131 2614 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Ptchd3Q0EEE2 D130052B06Rik-201ENSMUST00000101371 2295 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Ptchd3Q0EEE2 Muc20-201ENSMUST00000041123 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Ptchd3Q0EEE2 Dsp-202ENSMUST00000127906 7761 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.23
Ptchd3Q0EEE2 Krt26-201ENSMUST00000100482 2471 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Ptchd3Q0EEE2 Gm43156-201ENSMUST00000202338 2127 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
Ptchd3Q0EEE2 Kifc3-202ENSMUST00000169353 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.23
Ptchd3Q0EEE2 Skida1-202ENSMUST00000091420 4376 ntAPPRIS P2 TSL 5 BASIC13.58□□□□□ -0.23
Ptchd3Q0EEE2 Slc26a4-201ENSMUST00000001253 3075 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Ptchd3Q0EEE2 Gsdmd-201ENSMUST00000023238 1776 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Ptchd3Q0EEE2 Kcnj8-202ENSMUST00000203945 2548 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Ptchd3Q0EEE2 Cdx4-201ENSMUST00000033689 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ptchd3Q0EEE2 Kmt5c-203ENSMUST00000108583 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ptchd3Q0EEE2 Ccdc151-201ENSMUST00000044926 2197 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ptchd3Q0EEE2 Fhod3-201ENSMUST00000037097 5408 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ptchd3Q0EEE2 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
Ptchd3Q0EEE2 Sec62-201ENSMUST00000029256 3967 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ptchd3Q0EEE2 Tmem254c-202ENSMUST00000100819 1211 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ptchd3Q0EEE2 Hist1h4n-201ENSMUST00000102979 430 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
Ptchd3Q0EEE2 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
Ptchd3Q0EEE2 Dhdds-203ENSMUST00000105886 1015 ntTSL 5 BASIC13.58□□□□□ -0.24
Ptchd3Q0EEE2 Gm8584-201ENSMUST00000171982 758 ntBASIC13.58□□□□□ -0.24
Ptchd3Q0EEE2 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC13.58□□□□□ -0.24
Ptchd3Q0EEE2 Gm29520-201ENSMUST00000191209 1067 ntTSL 5 BASIC13.58□□□□□ -0.24
Ptchd3Q0EEE2 Gm2272-201ENSMUST00000194903 582 ntBASIC13.58□□□□□ -0.24
Ptchd3Q0EEE2 Olfr286-202ENSMUST00000205305 969 ntBASIC13.58□□□□□ -0.24
Ptchd3Q0EEE2 Tpd52l1-202ENSMUST00000213528 969 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ptchd3Q0EEE2 Zfyve21-206ENSMUST00000222843 705 ntTSL 3 BASIC13.58□□□□□ -0.24
Ptchd3Q0EEE2 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ptchd3Q0EEE2 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
Ptchd3Q0EEE2 Pkp3-202ENSMUST00000106039 2919 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ptchd3Q0EEE2 Ikzf4-201ENSMUST00000133342 5150 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
Ptchd3Q0EEE2 Celf5-201ENSMUST00000118763 4391 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ptchd3Q0EEE2 Tmem86b-202ENSMUST00000205360 1344 ntTSL 2 BASIC13.58□□□□□ -0.24
Ptchd3Q0EEE2 Dok7-203ENSMUST00000114270 2779 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ptchd3Q0EEE2 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ptchd3Q0EEE2 Ccser2-202ENSMUST00000090024 7509 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ptchd3Q0EEE2 Gigyf2-201ENSMUST00000027475 5724 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ptchd3Q0EEE2 Rhot1-204ENSMUST00000092857 3687 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ptchd3Q0EEE2 Ssc5d-201ENSMUST00000057612 4348 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ptchd3Q0EEE2 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC13.58□□□□□ -0.24
Ptchd3Q0EEE2 Otop2-202ENSMUST00000106544 2220 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ptchd3Q0EEE2 Desi1-206ENSMUST00000152227 2934 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ptchd3Q0EEE2 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
Ptchd3Q0EEE2 Sema6c-202ENSMUST00000090823 4029 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ptchd3Q0EEE2 Plk4-203ENSMUST00000203295 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ptchd3Q0EEE2 Wls-205ENSMUST00000198878 2050 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ptchd3Q0EEE2 Gm17619-201ENSMUST00000180625 1449 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Ptchd3Q0EEE2 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ptchd3Q0EEE2 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Ptchd3Q0EEE2 Ilvbl-203ENSMUST00000218215 2331 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Ptchd3Q0EEE2 Smg5-201ENSMUST00000001451 4448 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ptchd3Q0EEE2 Vps25-203ENSMUST00000100414 1220 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Ptchd3Q0EEE2 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
Ptchd3Q0EEE2 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
Ptchd3Q0EEE2 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
Ptchd3Q0EEE2 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Ptchd3Q0EEE2 Olfr1344-201ENSMUST00000168341 1061 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
Ptchd3Q0EEE2 Gm27301-201ENSMUST00000184012 127 ntBASIC13.57□□□□□ -0.24
Ptchd3Q0EEE2 Gm8597-201ENSMUST00000191525 1109 ntBASIC13.57□□□□□ -0.24
Ptchd3Q0EEE2 Gm43397-201ENSMUST00000196422 481 ntTSL 3 BASIC13.57□□□□□ -0.24
Ptchd3Q0EEE2 Gm44945-201ENSMUST00000206764 1187 ntBASIC13.57□□□□□ -0.24
Ptchd3Q0EEE2 Frmd5-213ENSMUST00000212518 922 ntTSL 5 BASIC13.57□□□□□ -0.24
Ptchd3Q0EEE2 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ptchd3Q0EEE2 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
Ptchd3Q0EEE2 Tspan18-201ENSMUST00000028646 1203 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ptchd3Q0EEE2 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ptchd3Q0EEE2 Prdm5-203ENSMUST00000081219 984 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Ptchd3Q0EEE2 Olfm1-202ENSMUST00000100244 2686 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Ptchd3Q0EEE2 Spred3-201ENSMUST00000048923 4056 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ptchd3Q0EEE2 Slc16a3-208ENSMUST00000168579 4335 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ptchd3Q0EEE2 Nkx6-3-201ENSMUST00000071588 2238 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ptchd3Q0EEE2 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ptchd3Q0EEE2 Scyl3-201ENSMUST00000027876 4368 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ptchd3Q0EEE2 Spred2-202ENSMUST00000093299 4449 ntTSL 5 BASIC13.57□□□□□ -0.24
Ptchd3Q0EEE2 Fgd6-201ENSMUST00000020208 8044 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ptchd3Q0EEE2 Parp16-202ENSMUST00000213396 2518 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ptchd3Q0EEE2 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ptchd3Q0EEE2 Dmrtc2-201ENSMUST00000011493 1619 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ptchd3Q0EEE2 Thap2-202ENSMUST00000218842 4970 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ptchd3Q0EEE2 Pnrc2-201ENSMUST00000030436 1919 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 AI480526-202ENSMUST00000159637 1697 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 Specc1-202ENSMUST00000092415 6797 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 Exd2-201ENSMUST00000038185 3310 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 Slc27a5-202ENSMUST00000120903 1468 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 Clmp-201ENSMUST00000034522 4154 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 Efemp1-201ENSMUST00000020759 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 Sema6c-201ENSMUST00000090821 3933 ntAPPRIS P3 TSL 5 BASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 Atg16l1-203ENSMUST00000113190 3102 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 Chfr-201ENSMUST00000014812 3146 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 Disp2-202ENSMUST00000063975 1505 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 Trim2-203ENSMUST00000107691 7428 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 46.8 ms