Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Gm20479-201ENSMUST00000126587 556 ntAPPRIS P1 TSL 3 BASIC11.49□□□□□ -0.57
Sdc1P18828 Gm13403-202ENSMUST00000134271 674 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Sdc1P18828 Slc25a5-201ENSMUST00000016463 1240 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Sdc1P18828 Gm4691-201ENSMUST00000182339 1000 ntBASIC11.49□□□□□ -0.57
Sdc1P18828 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Sdc1P18828 Gm2451-201ENSMUST00000199447 999 ntBASIC11.49□□□□□ -0.57
Sdc1P18828 Gm10290-201ENSMUST00000200451 999 ntBASIC11.49□□□□□ -0.57
Sdc1P18828 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Sdc1P18828 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Sdc1P18828 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Sdc1P18828 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Sdc1P18828 Mpp3-204ENSMUST00000107168 3094 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
Sdc1P18828 Rtkn2-203ENSMUST00000117086 2246 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Sdc1P18828 Stx11-202ENSMUST00000163425 4032 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Sdc1P18828 Rtn4-203ENSMUST00000102841 4060 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Sdc1P18828 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Sdc1P18828 Tmtc3-201ENSMUST00000058154 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Sdc1P18828 Limch1-204ENSMUST00000118242 5050 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
Sdc1P18828 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Sdc1P18828 Hnrnph2-202ENSMUST00000059297 2364 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Sdc1P18828 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC11.49□□□□□ -0.57
Sdc1P18828 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Sdc1P18828 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Sdc1P18828 Slc29a1-209ENSMUST00000166119 1598 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
Sdc1P18828 Ncan-201ENSMUST00000002412 7195 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Sdc1P18828 Sugp2-201ENSMUST00000093458 3874 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Sdc1P18828 Scube1-203ENSMUST00000076060 3913 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Sdc1P18828 Sin3a-208ENSMUST00000168678 5206 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
Sdc1P18828 Prss44-201ENSMUST00000098345 1838 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Sdc1P18828 Rps6kb1-207ENSMUST00000154617 5531 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Sdc1P18828 Stk38-202ENSMUST00000119274 1939 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Sdc1P18828 Nectin4-202ENSMUST00000094325 3245 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Sdc1P18828 Gm26576-201ENSMUST00000181018 1977 ntTSL 5 BASIC11.48□□□□□ -0.57
Sdc1P18828 Got1-201ENSMUST00000026196 2058 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Sdc1P18828 Lmntd2-201ENSMUST00000026573 2095 ntAPPRIS P2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Sdc1P18828 Cavin1-201ENSMUST00000060792 3491 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Sdc1P18828 Omp-201ENSMUST00000098281 2144 ntAPPRIS P1 BASIC11.48□□□□□ -0.57
Sdc1P18828 Unc5d-201ENSMUST00000168630 9220 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
Sdc1P18828 D130052B06Rik-201ENSMUST00000101371 2295 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Sdc1P18828 Top2b-201ENSMUST00000017629 10335 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Sdc1P18828 Micu1-204ENSMUST00000165563 2442 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
Sdc1P18828 M6pr-202ENSMUST00000112610 2539 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
Sdc1P18828 M6pr-201ENSMUST00000007602 2515 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Sdc1P18828 Podn-201ENSMUST00000044248 2885 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
Sdc1P18828 Kbtbd6-201ENSMUST00000100359 2982 ntAPPRIS ALT2 BASIC11.48□□□□□ -0.57
Sdc1P18828 Fancc-201ENSMUST00000073029 3165 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
Sdc1P18828 Prkce-201ENSMUST00000097274 3161 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Sdc1P18828 Slc39a8-201ENSMUST00000029810 3203 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Sdc1P18828 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
Sdc1P18828 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC11.48□□□□□ -0.57
Sdc1P18828 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Sdc1P18828 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC11.48□□□□□ -0.57
Sdc1P18828 Gm15794-201ENSMUST00000120182 631 ntBASIC11.48□□□□□ -0.57
Sdc1P18828 Gm9013-201ENSMUST00000132939 882 ntBASIC11.48□□□□□ -0.57
Sdc1P18828 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Sdc1P18828 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
Sdc1P18828 Ly6g6e-204ENSMUST00000172959 501 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Sdc1P18828 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC11.48□□□□□ -0.57
Sdc1P18828 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC11.48□□□□□ -0.57
Sdc1P18828 Gm7506-201ENSMUST00000207758 815 ntBASIC11.48□□□□□ -0.57
Sdc1P18828 Gm45328-201ENSMUST00000210942 917 ntBASIC11.48□□□□□ -0.57
Sdc1P18828 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC11.48□□□□□ -0.57
Sdc1P18828 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC11.48□□□□□ -0.57
Sdc1P18828 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Sdc1P18828 Clcn3-204ENSMUST00000110301 4099 ntAPPRIS ALT1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Sdc1P18828 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Sdc1P18828 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Sdc1P18828 Uhrf1bp1-201ENSMUST00000114849 8584 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Sdc1P18828 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC11.48□□□□□ -0.57
Sdc1P18828 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
Sdc1P18828 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Sdc1P18828 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Sdc1P18828 Rpl21-201ENSMUST00000035983 1856 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Sdc1P18828 Gpd2-207ENSMUST00000169687 5745 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Sdc1P18828 Myh3-201ENSMUST00000007301 5992 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
Sdc1P18828 Arhgef2-208ENSMUST00000175911 2030 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
Sdc1P18828 Zeb2-211ENSMUST00000153561 2070 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Sdc1P18828 Vmn1r198-203ENSMUST00000226909 6259 ntAPPRIS P2 BASIC11.48□□□□□ -0.57
Sdc1P18828 Pisd-201ENSMUST00000061895 2183 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
Sdc1P18828 Tmub2-205ENSMUST00000156326 2249 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Sdc1P18828 Tfdp2-203ENSMUST00000165768 2212 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Sdc1P18828 Astl-202ENSMUST00000089673 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Sdc1P18828 Pdxk-ps-201ENSMUST00000159650 2342 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Sdc1P18828 Tmem55a-201ENSMUST00000029875 2339 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Sdc1P18828 Phf13-201ENSMUST00000055688 3205 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Sdc1P18828 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
Sdc1P18828 Itga3-203ENSMUST00000120375 4697 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Sdc1P18828 Edc3-201ENSMUST00000043990 5708 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Sdc1P18828 C2cd4c-201ENSMUST00000059699 6729 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Sdc1P18828 Esr1-204ENSMUST00000105590 6339 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Sdc1P18828 Kcnk2-202ENSMUST00000110920 3572 ntAPPRIS ALT1 TSL 5 BASIC11.47□□□□□ -0.57
Sdc1P18828 Elk1-201ENSMUST00000009550 3548 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Sdc1P18828 Pck2-205ENSMUST00000226352 2784 ntBASIC11.47□□□□□ -0.57
Sdc1P18828 Gm20554-201ENSMUST00000177421 2352 ntBASIC11.47□□□□□ -0.57
Sdc1P18828 Gria4-203ENSMUST00000163309 2338 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Sdc1P18828 C530008M17Rik-202ENSMUST00000120639 6826 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Sdc1P18828 C530008M17Rik-211ENSMUST00000163347 6835 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Sdc1P18828 Ntm-203ENSMUST00000115237 2039 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Sdc1P18828 Tcf21-202ENSMUST00000218002 1788 ntBASIC11.47□□□□□ -0.57
Sdc1P18828 Ahi1-201ENSMUST00000105525 4851 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 43.1 ms