Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Ddhd1-203ENSMUST00000111828 9802 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim54Q9ERP3 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim54Q9ERP3 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim54Q9ERP3 Gpr88-201ENSMUST00000090473 3469 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim54Q9ERP3 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim54Q9ERP3 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim54Q9ERP3 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim54Q9ERP3 Brpf1-209ENSMUST00000204198 4307 ntTSL 5 BASIC15.23■□□□□ 0.03
Trim54Q9ERP3 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim54Q9ERP3 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim54Q9ERP3 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim54Q9ERP3 Zfp296-201ENSMUST00000108453 1530 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim54Q9ERP3 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim54Q9ERP3 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim54Q9ERP3 Adamts15-201ENSMUST00000065112 5928 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim54Q9ERP3 B130055M24Rik-201ENSMUST00000144796 1778 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Trim54Q9ERP3 Tdrd6-203ENSMUST00000168073 7062 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim54Q9ERP3 Wfdc3-201ENSMUST00000103096 911 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim54Q9ERP3 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Trim54Q9ERP3 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Trim54Q9ERP3 Gm16194-204ENSMUST00000141797 475 ntTSL 3 BASIC15.22■□□□□ 0.03
Trim54Q9ERP3 Ercc1-203ENSMUST00000160369 1175 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Trim54Q9ERP3 Zfp936-202ENSMUST00000200973 578 ntTSL 3 BASIC15.22■□□□□ 0.03
Trim54Q9ERP3 Gm4129-201ENSMUST00000220083 625 ntTSL 3 BASIC15.22■□□□□ 0.03
Trim54Q9ERP3 Tssc1-207ENSMUST00000222407 489 ntTSL 3 BASIC15.22■□□□□ 0.03
Trim54Q9ERP3 Wdr74-201ENSMUST00000049424 1204 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim54Q9ERP3 Myrf-201ENSMUST00000088013 5674 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Trim54Q9ERP3 Pid1-204ENSMUST00000176559 1564 ntTSL 2 BASIC15.22■□□□□ 0.03
Trim54Q9ERP3 Tbx6-201ENSMUST00000094037 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim54Q9ERP3 Gcnt2-205ENSMUST00000225759 1366 ntAPPRIS ALT2 BASIC15.22■□□□□ 0.03
Trim54Q9ERP3 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim54Q9ERP3 Ccdc157-202ENSMUST00000101626 5153 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim54Q9ERP3 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Trim54Q9ERP3 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Trim54Q9ERP3 Tepsin-203ENSMUST00000106225 2566 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Trim54Q9ERP3 Brd7-201ENSMUST00000034085 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim54Q9ERP3 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trim54Q9ERP3 Car7-202ENSMUST00000159416 1943 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Trim54Q9ERP3 Scube1-205ENSMUST00000171496 7824 ntAPPRIS P3 TSL 5 BASIC15.21■□□□□ 0.03
Trim54Q9ERP3 Lancl3-201ENSMUST00000069763 3991 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trim54Q9ERP3 Itgb1-201ENSMUST00000090006 3815 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trim54Q9ERP3 Mib1-201ENSMUST00000052838 10231 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trim54Q9ERP3 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC15.21■□□□□ 0.03
Trim54Q9ERP3 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trim54Q9ERP3 Sgtb-201ENSMUST00000044385 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trim54Q9ERP3 Thap12-201ENSMUST00000033009 3723 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trim54Q9ERP3 Rpl36al-203ENSMUST00000110620 757 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
Trim54Q9ERP3 Gm15678-201ENSMUST00000117573 960 ntBASIC15.21■□□□□ 0.03
Trim54Q9ERP3 Gm12960-201ENSMUST00000120017 1066 ntBASIC15.21■□□□□ 0.03
Trim54Q9ERP3 Cd209g-201ENSMUST00000130372 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trim54Q9ERP3 Gm37667-201ENSMUST00000193103 752 ntTSL 5 BASIC15.21■□□□□ 0.03
Trim54Q9ERP3 Gm37714-201ENSMUST00000194742 342 ntBASIC15.21■□□□□ 0.03
Trim54Q9ERP3 AC162801.1-201ENSMUST00000220612 198 ntBASIC15.21■□□□□ 0.03
Trim54Q9ERP3 AC102291.3-201ENSMUST00000226566 405 ntBASIC15.21■□□□□ 0.03
Trim54Q9ERP3 AC149294.4-201ENSMUST00000227870 882 ntBASIC15.21■□□□□ 0.03
Trim54Q9ERP3 Tmem219-201ENSMUST00000032926 941 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trim54Q9ERP3 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC15.21■□□□□ 0.03
Trim54Q9ERP3 Ccnj-202ENSMUST00000119316 3763 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Trim54Q9ERP3 Lurap1l-201ENSMUST00000055922 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trim54Q9ERP3 Sacs-201ENSMUST00000089394 3345 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trim54Q9ERP3 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.02
Trim54Q9ERP3 Doc2b-201ENSMUST00000021209 4361 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Trim54Q9ERP3 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
Trim54Q9ERP3 Tnip2-201ENSMUST00000030991 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
Trim54Q9ERP3 Spag1-202ENSMUST00000171205 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Trim54Q9ERP3 AC154527.2-201ENSMUST00000225256 1466 ntBASIC15.2■□□□□ 0.02
Trim54Q9ERP3 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trim54Q9ERP3 1110028F18Rik-201ENSMUST00000183365 1341 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Trim54Q9ERP3 Scara3-201ENSMUST00000042046 3597 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trim54Q9ERP3 Slc27a1-201ENSMUST00000034267 2795 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trim54Q9ERP3 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trim54Q9ERP3 Gm13111-201ENSMUST00000136217 3542 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Trim54Q9ERP3 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Trim54Q9ERP3 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Trim54Q9ERP3 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trim54Q9ERP3 Rreb1-202ENSMUST00000110237 4617 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Trim54Q9ERP3 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trim54Q9ERP3 Mcmbp-201ENSMUST00000057557 4237 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trim54Q9ERP3 Iqgap1-201ENSMUST00000167377 7444 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trim54Q9ERP3 Tns1-222ENSMUST00000212888 5643 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Trim54Q9ERP3 Mif4gd-202ENSMUST00000106506 993 ntTSL 3 BASIC15.2■□□□□ 0.02
Trim54Q9ERP3 Pisd-ps1-201ENSMUST00000119128 1115 ntBASIC15.2■□□□□ 0.02
Trim54Q9ERP3 Dhrs2-202ENSMUST00000165432 849 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Trim54Q9ERP3 Arf5-202ENSMUST00000169841 768 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Trim54Q9ERP3 Stk19-ps1-201ENSMUST00000174597 517 ntBASIC15.2■□□□□ 0.02
Trim54Q9ERP3 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Trim54Q9ERP3 Gm8225-201ENSMUST00000090257 879 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trim54Q9ERP3 Tmem139-201ENSMUST00000095987 1147 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
Trim54Q9ERP3 Sf3a1-201ENSMUST00000002198 4920 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trim54Q9ERP3 Kcnc2-201ENSMUST00000092175 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trim54Q9ERP3 Adm-201ENSMUST00000033054 1390 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trim54Q9ERP3 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Trim54Q9ERP3 Rnf180-203ENSMUST00000224662 2734 ntAPPRIS ALT2 BASIC15.2■□□□□ 0.02
Trim54Q9ERP3 Zbtb46-201ENSMUST00000029106 5309 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Trim54Q9ERP3 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trim54Q9ERP3 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Trim54Q9ERP3 Tarsl2-201ENSMUST00000032728 3192 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trim54Q9ERP3 Rbm33-202ENSMUST00000059644 9510 ntAPPRIS P2 TSL 5 BASIC15.2■□□□□ 0.02
Trim54Q9ERP3 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trim54Q9ERP3 Ubn2-201ENSMUST00000039127 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 38.1 ms