Protein–RNA interactions for Protein: Q9EQM3

Nkx2-4, Homeobox protein Nkx-2.4, mousemouse

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-4Q9EQM3 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Nkx2-4Q9EQM3 Tmtc3-202ENSMUST00000099318 2794 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Nkx2-4Q9EQM3 Gm5779-202ENSMUST00000219564 1477 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Nkx2-4Q9EQM3 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC14.36□□□□□ -0.11
Nkx2-4Q9EQM3 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Nkx2-4Q9EQM3 Med26-201ENSMUST00000058534 2997 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Nkx2-4Q9EQM3 Ewsr1-201ENSMUST00000063232 1320 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Nkx2-4Q9EQM3 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Nkx2-4Q9EQM3 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC14.36□□□□□ -0.11
Nkx2-4Q9EQM3 Mcidas-201ENSMUST00000092089 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Nkx2-4Q9EQM3 Gm4981-201ENSMUST00000099726 1854 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Nkx2-4Q9EQM3 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx2-4Q9EQM3 Atl1-201ENSMUST00000021466 5150 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx2-4Q9EQM3 Spdef-202ENSMUST00000114870 2070 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Nkx2-4Q9EQM3 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx2-4Q9EQM3 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx2-4Q9EQM3 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx2-4Q9EQM3 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC14.35□□□□□ -0.11
Nkx2-4Q9EQM3 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx2-4Q9EQM3 Btaf1-201ENSMUST00000099494 7204 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx2-4Q9EQM3 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx2-4Q9EQM3 Ppfia3-201ENSMUST00000003961 4647 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx2-4Q9EQM3 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx2-4Q9EQM3 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx2-4Q9EQM3 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx2-4Q9EQM3 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx2-4Q9EQM3 Gm11638-201ENSMUST00000153672 1615 ntTSL 2 BASIC14.35□□□□□ -0.11
Nkx2-4Q9EQM3 Gm10369-201ENSMUST00000100641 1148 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx2-4Q9EQM3 Agbl3-202ENSMUST00000115012 790 ntTSL 3 BASIC14.35□□□□□ -0.11
Nkx2-4Q9EQM3 Agbl3-203ENSMUST00000115014 805 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx2-4Q9EQM3 Gm11754-201ENSMUST00000156576 661 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx2-4Q9EQM3 Ccdc103-202ENSMUST00000159834 1156 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx2-4Q9EQM3 Prss51-202ENSMUST00000165710 953 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx2-4Q9EQM3 Rwdd3-209ENSMUST00000170781 1111 ntTSL 5 BASIC14.35□□□□□ -0.11
Nkx2-4Q9EQM3 Gm20404-201ENSMUST00000174032 621 ntTSL 3 BASIC14.35□□□□□ -0.11
Nkx2-4Q9EQM3 Gm38000-201ENSMUST00000192390 1215 ntBASIC14.35□□□□□ -0.11
Nkx2-4Q9EQM3 Gm36937-201ENSMUST00000192957 429 ntTSL 3 BASIC14.35□□□□□ -0.11
Nkx2-4Q9EQM3 Gm7118-201ENSMUST00000200167 1003 ntBASIC14.35□□□□□ -0.11
Nkx2-4Q9EQM3 Olfr284-202ENSMUST00000206647 966 ntBASIC14.35□□□□□ -0.11
Nkx2-4Q9EQM3 Gm45865-201ENSMUST00000211815 945 ntBASIC14.35□□□□□ -0.11
Nkx2-4Q9EQM3 Mien1-201ENSMUST00000002655 747 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx2-4Q9EQM3 Krtap19-2-201ENSMUST00000076186 605 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Nkx2-4Q9EQM3 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx2-4Q9EQM3 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx2-4Q9EQM3 Asic3-201ENSMUST00000049346 1853 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx2-4Q9EQM3 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx2-4Q9EQM3 Pdhx-202ENSMUST00000111183 2078 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx2-4Q9EQM3 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC14.35□□□□□ -0.11
Nkx2-4Q9EQM3 Tmem80-204ENSMUST00000128906 1387 ntTSL 2 BASIC14.34□□□□□ -0.11
Nkx2-4Q9EQM3 Pef1-201ENSMUST00000030563 1551 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx2-4Q9EQM3 Itpripl1-203ENSMUST00000154021 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx2-4Q9EQM3 Spock1-203ENSMUST00000185905 2794 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx2-4Q9EQM3 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx2-4Q9EQM3 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Nkx2-4Q9EQM3 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx2-4Q9EQM3 Pdpn-201ENSMUST00000030317 1817 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx2-4Q9EQM3 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx2-4Q9EQM3 Suv39h2-201ENSMUST00000027956 4327 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx2-4Q9EQM3 Abhd3-202ENSMUST00000117726 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx2-4Q9EQM3 Alx4-201ENSMUST00000042078 5253 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx2-4Q9EQM3 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx2-4Q9EQM3 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx2-4Q9EQM3 Capns2-201ENSMUST00000104947 1005 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Nkx2-4Q9EQM3 Fgf8-203ENSMUST00000111924 630 ntTSL 5 BASIC14.34□□□□□ -0.11
Nkx2-4Q9EQM3 Rpl17-ps5-201ENSMUST00000121001 555 ntBASIC14.34□□□□□ -0.11
Nkx2-4Q9EQM3 Ly6g5b-202ENSMUST00000172854 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx2-4Q9EQM3 Ggt5-203ENSMUST00000189972 648 ntTSL 3 BASIC14.34□□□□□ -0.11
Nkx2-4Q9EQM3 Tm2d2-202ENSMUST00000210536 727 ntTSL 3 BASIC14.34□□□□□ -0.11
Nkx2-4Q9EQM3 Gm45720-201ENSMUST00000211881 484 ntTSL 3 BASIC14.34□□□□□ -0.11
Nkx2-4Q9EQM3 Tex13b-201ENSMUST00000044179 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx2-4Q9EQM3 Il27-201ENSMUST00000058429 1021 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx2-4Q9EQM3 Fam173a-201ENSMUST00000072735 800 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx2-4Q9EQM3 Mir497b-201ENSMUST00000093601 125 ntBASIC14.34□□□□□ -0.11
Nkx2-4Q9EQM3 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx2-4Q9EQM3 Galnt18-201ENSMUST00000049430 2575 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx2-4Q9EQM3 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx2-4Q9EQM3 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx2-4Q9EQM3 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx2-4Q9EQM3 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx2-4Q9EQM3 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
Nkx2-4Q9EQM3 Tnip2-201ENSMUST00000030991 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx2-4Q9EQM3 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx2-4Q9EQM3 2510009E07Rik-201ENSMUST00000053336 5164 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx2-4Q9EQM3 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx2-4Q9EQM3 Tmem159-202ENSMUST00000118737 1395 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Nkx2-4Q9EQM3 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx2-4Q9EQM3 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Nkx2-4Q9EQM3 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.11
Nkx2-4Q9EQM3 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.11
Nkx2-4Q9EQM3 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC14.33□□□□□ -0.11
Nkx2-4Q9EQM3 Ube2j2-213ENSMUST00000166489 3339 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Nkx2-4Q9EQM3 Dgkz-201ENSMUST00000028667 3584 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.11
Nkx2-4Q9EQM3 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Nkx2-4Q9EQM3 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Nkx2-4Q9EQM3 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Nkx2-4Q9EQM3 Syce1-201ENSMUST00000026553 1460 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Nkx2-4Q9EQM3 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Nkx2-4Q9EQM3 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Nkx2-4Q9EQM3 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Nkx2-4Q9EQM3 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 32.7 ms