Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Slc41a3-201ENSMUST00000032177 2324 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim56Q80VI1 Slc39a2-201ENSMUST00000047726 2334 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim56Q80VI1 Mto1-201ENSMUST00000034896 2366 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim56Q80VI1 Myg1-202ENSMUST00000113682 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim56Q80VI1 Diras2-201ENSMUST00000057442 4786 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim56Q80VI1 Foxi2-201ENSMUST00000060356 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim56Q80VI1 Tmem181b-ps-203ENSMUST00000188746 1626 ntTSL 5 BASIC16.59■□□□□ 0.25
Trim56Q80VI1 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
Trim56Q80VI1 Tbx3os1-206ENSMUST00000202307 1787 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Trim56Q80VI1 Fam217a-204ENSMUST00000225242 1811 ntAPPRIS ALT2 BASIC16.59■□□□□ 0.25
Trim56Q80VI1 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim56Q80VI1 Fam151a-201ENSMUST00000047620 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Trim56Q80VI1 Atat1-201ENSMUST00000056034 1930 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
Trim56Q80VI1 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Trim56Q80VI1 Uvrag-201ENSMUST00000037968 5157 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Trim56Q80VI1 Slc52a3-203ENSMUST00000109859 2204 ntTSL 5 BASIC16.58■□□□□ 0.25
Trim56Q80VI1 Gm26513-201ENSMUST00000181802 2489 ntBASIC16.58■□□□□ 0.25
Trim56Q80VI1 Slc12a5-201ENSMUST00000099092 6028 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.25
Trim56Q80VI1 Kdm4b-202ENSMUST00000086835 4360 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
Trim56Q80VI1 AC167013.2-201ENSMUST00000228520 2684 ntBASIC16.58■□□□□ 0.25
Trim56Q80VI1 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
Trim56Q80VI1 Smarce1-201ENSMUST00000103133 2919 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trim56Q80VI1 Nr4a2-203ENSMUST00000112629 3422 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
Trim56Q80VI1 Tmem219-204ENSMUST00000121532 915 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trim56Q80VI1 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Trim56Q80VI1 2700012I20Rik-201ENSMUST00000180525 684 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Trim56Q80VI1 Olfr1412-201ENSMUST00000062964 966 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
Trim56Q80VI1 Cep170b-211ENSMUST00000222711 6566 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
Trim56Q80VI1 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
Trim56Q80VI1 Ptx4-201ENSMUST00000054930 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trim56Q80VI1 Exosc5-206ENSMUST00000206561 1680 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trim56Q80VI1 Mbp-202ENSMUST00000062446 2186 ntAPPRIS P4 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trim56Q80VI1 2010300F17Rik-202ENSMUST00000181758 2493 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Trim56Q80VI1 Pax2-201ENSMUST00000004340 3095 ntTSL 5 BASIC16.58■□□□□ 0.24
Trim56Q80VI1 A930004D18Rik-201ENSMUST00000066163 3217 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trim56Q80VI1 Pard3-202ENSMUST00000079777 3394 ntTSL 5 BASIC16.58■□□□□ 0.24
Trim56Q80VI1 Nop9-201ENSMUST00000019441 3694 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trim56Q80VI1 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trim56Q80VI1 Magi1-202ENSMUST00000089317 7209 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trim56Q80VI1 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trim56Q80VI1 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
Trim56Q80VI1 Apln-201ENSMUST00000039026 3149 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trim56Q80VI1 Pgr-201ENSMUST00000070463 3068 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trim56Q80VI1 Pgr-202ENSMUST00000098986 3068 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Trim56Q80VI1 Adal-204ENSMUST00000110665 2356 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Trim56Q80VI1 Ctgf-201ENSMUST00000020171 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trim56Q80VI1 Mcidas-201ENSMUST00000092089 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trim56Q80VI1 Ist1-201ENSMUST00000034164 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trim56Q80VI1 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trim56Q80VI1 AC166574.6-201ENSMUST00000227889 1806 ntBASIC16.57■□□□□ 0.24
Trim56Q80VI1 Gm45760-201ENSMUST00000212190 1782 ntBASIC16.57■□□□□ 0.24
Trim56Q80VI1 Dennd1a-201ENSMUST00000102787 4342 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trim56Q80VI1 Ghr-203ENSMUST00000110698 1171 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Trim56Q80VI1 Gm15240-201ENSMUST00000118156 720 ntBASIC16.57■□□□□ 0.24
Trim56Q80VI1 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trim56Q80VI1 Gm4804-201ENSMUST00000182234 999 ntBASIC16.57■□□□□ 0.24
Trim56Q80VI1 Gm40193-201ENSMUST00000209971 237 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
Trim56Q80VI1 Epo-201ENSMUST00000031723 715 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trim56Q80VI1 Tmem219-201ENSMUST00000032926 941 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trim56Q80VI1 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trim56Q80VI1 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trim56Q80VI1 Cmc2-201ENSMUST00000078589 523 ntTSL 2 BASIC16.57■□□□□ 0.24
Trim56Q80VI1 Nt5c2-202ENSMUST00000168536 3769 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trim56Q80VI1 Dgki-202ENSMUST00000090314 3784 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
Trim56Q80VI1 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC16.57■□□□□ 0.24
Trim56Q80VI1 Bend4-201ENSMUST00000169190 7935 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
Trim56Q80VI1 Olfr317-203ENSMUST00000216196 2781 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
Trim56Q80VI1 Sesn1-201ENSMUST00000041438 2600 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trim56Q80VI1 Mocs2-208ENSMUST00000166176 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim56Q80VI1 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim56Q80VI1 Spo11-202ENSMUST00000109125 1591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim56Q80VI1 Scg2-201ENSMUST00000049972 2515 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
Trim56Q80VI1 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim56Q80VI1 Pcolce2-201ENSMUST00000015498 4438 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim56Q80VI1 Ldb3-207ENSMUST00000227819 1499 ntBASIC16.56■□□□□ 0.24
Trim56Q80VI1 Proser2-202ENSMUST00000114942 4398 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim56Q80VI1 Lurap1l-201ENSMUST00000055922 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim56Q80VI1 Ino80-202ENSMUST00000110808 3928 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Trim56Q80VI1 Krt71-201ENSMUST00000023710 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim56Q80VI1 Ash2l-202ENSMUST00000110608 2134 ntTSL 5 BASIC16.56■□□□□ 0.24
Trim56Q80VI1 Gm7488-201ENSMUST00000117148 684 ntBASIC16.56■□□□□ 0.24
Trim56Q80VI1 Ube2j2-206ENSMUST00000118192 922 ntTSL 5 BASIC16.56■□□□□ 0.24
Trim56Q80VI1 Gm12212-201ENSMUST00000141032 378 ntTSL 3 BASIC16.56■□□□□ 0.24
Trim56Q80VI1 Gm12446-202ENSMUST00000152069 713 ntTSL 2 BASIC16.56■□□□□ 0.24
Trim56Q80VI1 Ighv1-51-201ENSMUST00000192903 354 ntBASIC16.56■□□□□ 0.24
Trim56Q80VI1 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Trim56Q80VI1 Armc12-201ENSMUST00000025060 1083 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim56Q80VI1 1700020A23Rik-201ENSMUST00000028898 712 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim56Q80VI1 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim56Q80VI1 Olfr750-201ENSMUST00000048478 1132 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
Trim56Q80VI1 Gm8225-201ENSMUST00000090257 879 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim56Q80VI1 Six3os1-211ENSMUST00000176958 2889 ntTSL 2 BASIC16.56■□□□□ 0.24
Trim56Q80VI1 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim56Q80VI1 Tbl1x-201ENSMUST00000088217 5234 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim56Q80VI1 Dhx34-203ENSMUST00000119102 4310 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
Trim56Q80VI1 Map4k5-202ENSMUST00000110567 4250 ntTSL 5 BASIC16.56■□□□□ 0.24
Trim56Q80VI1 Anks1b-205ENSMUST00000179694 2663 ntTSL 5 BASIC16.56■□□□□ 0.24
Trim56Q80VI1 Abcg8-202ENSMUST00000170725 2415 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Trim56Q80VI1 Magi1-201ENSMUST00000055224 7007 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Trim56Q80VI1 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 30.6 ms