Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Gm30285-201ENSMUST00000214614 422 ntBASIC15.44■□□□□ 0.06
Col11a1Q61245 Tmem108-206ENSMUST00000215136 724 ntTSL 3 BASIC15.44■□□□□ 0.06
Col11a1Q61245 Gm18244-201ENSMUST00000219747 1566 ntBASIC15.44■□□□□ 0.06
Col11a1Q61245 Gm29787-201ENSMUST00000222129 849 ntBASIC15.44■□□□□ 0.06
Col11a1Q61245 Majin-201ENSMUST00000025699 1239 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Col11a1Q61245 Brk1-201ENSMUST00000035725 1095 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Col11a1Q61245 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Col11a1Q61245 Rasgrp2-208ENSMUST00000113476 2296 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
Col11a1Q61245 4930481A15Rik-201ENSMUST00000128542 2106 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Col11a1Q61245 Mus81-202ENSMUST00000124334 2067 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Col11a1Q61245 Ddo-203ENSMUST00000213503 1759 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Col11a1Q61245 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Col11a1Q61245 Art3-206ENSMUST00000120416 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Col11a1Q61245 Gm45765-202ENSMUST00000212921 1313 ntTSL 5 BASIC15.44■□□□□ 0.06
Col11a1Q61245 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Col11a1Q61245 Acsl6-201ENSMUST00000000145 2297 ntTSL 5 BASIC15.43■□□□□ 0.06
Col11a1Q61245 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Col11a1Q61245 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
Col11a1Q61245 Tbk1-201ENSMUST00000020316 3024 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Col11a1Q61245 Lamtor2-202ENSMUST00000119002 568 ntTSL 2 BASIC15.43■□□□□ 0.06
Col11a1Q61245 G630018N14Rik-201ENSMUST00000135656 1231 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Col11a1Q61245 Gm24990-201ENSMUST00000157406 323 ntBASIC15.43■□□□□ 0.06
Col11a1Q61245 Gm24548-201ENSMUST00000158650 108 ntBASIC15.43■□□□□ 0.06
Col11a1Q61245 Synj2bp-205ENSMUST00000169158 691 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Col11a1Q61245 Gm38144-201ENSMUST00000192790 465 ntBASIC15.43■□□□□ 0.06
Col11a1Q61245 2610300A13Rik-201ENSMUST00000192930 503 ntBASIC15.43■□□□□ 0.06
Col11a1Q61245 Hspb2-202ENSMUST00000217159 552 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Col11a1Q61245 Gm5781-201ENSMUST00000219792 443 ntBASIC15.43■□□□□ 0.06
Col11a1Q61245 Cyct-201ENSMUST00000028430 655 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Col11a1Q61245 Gm43423-201ENSMUST00000198390 2094 ntBASIC15.43■□□□□ 0.06
Col11a1Q61245 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Col11a1Q61245 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Col11a1Q61245 Tarsl2-201ENSMUST00000032728 3192 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Col11a1Q61245 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Col11a1Q61245 Mmp21-201ENSMUST00000033278 1858 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Col11a1Q61245 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Col11a1Q61245 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC15.43■□□□□ 0.06
Col11a1Q61245 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Col11a1Q61245 Prss8-202ENSMUST00000206124 1709 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Col11a1Q61245 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Col11a1Q61245 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC15.43■□□□□ 0.06
Col11a1Q61245 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Col11a1Q61245 Pxn-214ENSMUST00000212819 1689 ntTSL 5 BASIC15.43■□□□□ 0.06
Col11a1Q61245 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Col11a1Q61245 Pcgf2-201ENSMUST00000018681 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Col11a1Q61245 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Col11a1Q61245 Fam234a-201ENSMUST00000114988 3714 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Col11a1Q61245 Med9os-203ENSMUST00000146334 527 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Col11a1Q61245 Gm27341-201ENSMUST00000183570 106 ntBASIC15.43■□□□□ 0.06
Col11a1Q61245 Gm38161-201ENSMUST00000195344 576 ntTSL 2 BASIC15.43■□□□□ 0.06
Col11a1Q61245 Gm43303-201ENSMUST00000200133 669 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Col11a1Q61245 Crip3-201ENSMUST00000024764 955 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Col11a1Q61245 Rpl10a-201ENSMUST00000042334 829 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Col11a1Q61245 Crabp2-201ENSMUST00000005019 931 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Col11a1Q61245 Gm16519-201ENSMUST00000092011 489 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
Col11a1Q61245 Selplg-201ENSMUST00000100874 1855 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Col11a1Q61245 Adal-201ENSMUST00000028702 2471 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Col11a1Q61245 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC15.43■□□□□ 0.06
Col11a1Q61245 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Col11a1Q61245 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC15.42■□□□□ 0.06
Col11a1Q61245 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col11a1Q61245 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col11a1Q61245 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Col11a1Q61245 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col11a1Q61245 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col11a1Q61245 4931406C07Rik-208ENSMUST00000216955 1750 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Col11a1Q61245 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col11a1Q61245 Lrp1-202ENSMUST00000118455 2097 ntTSL 5 BASIC15.42■□□□□ 0.06
Col11a1Q61245 Pqbp1-203ENSMUST00000115655 1148 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col11a1Q61245 Gm11637-201ENSMUST00000120601 592 ntBASIC15.42■□□□□ 0.06
Col11a1Q61245 Gm8584-201ENSMUST00000171982 758 ntBASIC15.42■□□□□ 0.06
Col11a1Q61245 Gm20416-201ENSMUST00000174760 484 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Col11a1Q61245 Gm25732-201ENSMUST00000175168 60 ntBASIC15.42■□□□□ 0.06
Col11a1Q61245 Tex9-206ENSMUST00000183574 1264 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col11a1Q61245 Hax1-206ENSMUST00000197786 857 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col11a1Q61245 Gm43947-201ENSMUST00000203019 959 ntBASIC15.42■□□□□ 0.06
Col11a1Q61245 Morn3-201ENSMUST00000031437 1128 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col11a1Q61245 Fam96a-201ENSMUST00000034945 1240 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col11a1Q61245 Amhr2-201ENSMUST00000023809 1938 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col11a1Q61245 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col11a1Q61245 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col11a1Q61245 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Col11a1Q61245 Rbmx2-201ENSMUST00000033433 1747 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Col11a1Q61245 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Col11a1Q61245 Syt10-201ENSMUST00000029441 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Col11a1Q61245 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Col11a1Q61245 Cenpl-203ENSMUST00000111620 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Col11a1Q61245 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Col11a1Q61245 Gngt2-207ENSMUST00000107714 558 ntAPPRIS P1 TSL 3 BASIC15.41■□□□□ 0.06
Col11a1Q61245 Pigp-205ENSMUST00000113917 805 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Col11a1Q61245 Gm12715-201ENSMUST00000121430 1128 ntBASIC15.41■□□□□ 0.06
Col11a1Q61245 Tnfrsf18-203ENSMUST00000122001 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Col11a1Q61245 D230022J07Rik-201ENSMUST00000144735 1062 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Col11a1Q61245 Gm29856-201ENSMUST00000191905 1257 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Col11a1Q61245 Gm32926-201ENSMUST00000214043 681 ntTSL 3 BASIC15.41■□□□□ 0.06
Col11a1Q61245 AC139319.1-201ENSMUST00000223331 690 ntTSL 5 BASIC15.41■□□□□ 0.06
Col11a1Q61245 Rpl24-201ENSMUST00000023269 677 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Col11a1Q61245 Ggact-201ENSMUST00000038075 1076 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Col11a1Q61245 Chchd10-203ENSMUST00000219839 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Col11a1Q61245 Rfx7-205ENSMUST00000184015 1554 ntTSL 5 BASIC15.41■□□□□ 0.06
Retrieved 100 of 76,532 protein–RNA pairs in 45.2 ms