Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 F830212C03Rik-201ENSMUST00000191701 2285 ntBASIC21.17■□□□□ 0.98
Col17a1Q07563 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col17a1Q07563 Dnajb11-204ENSMUST00000166487 2534 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col17a1Q07563 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
Col17a1Q07563 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col17a1Q07563 Map2k6-202ENSMUST00000100260 2088 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Col17a1Q07563 Gm7541-201ENSMUST00000118361 535 ntBASIC21.16■□□□□ 0.98
Col17a1Q07563 Vmn1r-ps63-201ENSMUST00000174565 989 ntBASIC21.16■□□□□ 0.98
Col17a1Q07563 Gm29083-201ENSMUST00000189205 733 ntTSL 3 BASIC21.16■□□□□ 0.98
Col17a1Q07563 D730001G18Rik-202ENSMUST00000191407 1494 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col17a1Q07563 2610300A13Rik-201ENSMUST00000192930 503 ntBASIC21.16■□□□□ 0.98
Col17a1Q07563 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col17a1Q07563 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC21.16■□□□□ 0.98
Col17a1Q07563 Fuca1-201ENSMUST00000030434 2525 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col17a1Q07563 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col17a1Q07563 Acadm-201ENSMUST00000072697 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col17a1Q07563 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col17a1Q07563 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC21.16■□□□□ 0.98
Col17a1Q07563 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col17a1Q07563 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC21.16■□□□□ 0.98
Col17a1Q07563 Abhd6-203ENSMUST00000225234 1958 ntBASIC21.16■□□□□ 0.98
Col17a1Q07563 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col17a1Q07563 Gm3830-201ENSMUST00000185540 1715 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Col17a1Q07563 Gm11470-201ENSMUST00000118868 1475 ntBASIC21.15■□□□□ 0.98
Col17a1Q07563 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col17a1Q07563 Rhbdl2-202ENSMUST00000106204 1120 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
Col17a1Q07563 Gm15432-201ENSMUST00000121106 195 ntBASIC21.15■□□□□ 0.98
Col17a1Q07563 Gm12403-201ENSMUST00000121384 959 ntBASIC21.15■□□□□ 0.98
Col17a1Q07563 Gm15891-201ENSMUST00000127307 611 ntTSL 5 BASIC21.15■□□□□ 0.98
Col17a1Q07563 Gm15972-201ENSMUST00000132571 418 ntTSL 2 BASIC21.15■□□□□ 0.98
Col17a1Q07563 1700030C14Rik-201ENSMUST00000139912 756 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Col17a1Q07563 Gm4335-201ENSMUST00000182581 1004 ntBASIC21.15■□□□□ 0.98
Col17a1Q07563 Gm2546-201ENSMUST00000182630 991 ntBASIC21.15■□□□□ 0.98
Col17a1Q07563 Gm4691-202ENSMUST00000182989 885 ntTSL 5 BASIC21.15■□□□□ 0.98
Col17a1Q07563 Gm5896-201ENSMUST00000189662 1024 ntBASIC21.15■□□□□ 0.98
Col17a1Q07563 Rassf4-202ENSMUST00000203029 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col17a1Q07563 Ankrd7-201ENSMUST00000031489 1190 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col17a1Q07563 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Col17a1Q07563 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
Col17a1Q07563 Gm42918-201ENSMUST00000199249 1580 ntBASIC21.15■□□□□ 0.98
Col17a1Q07563 Cdk15-201ENSMUST00000114248 1477 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col17a1Q07563 Psmd12-202ENSMUST00000106750 1311 ntTSL 5 BASIC21.14■□□□□ 0.98
Col17a1Q07563 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Col17a1Q07563 Bcas3os2-201ENSMUST00000134305 661 ntTSL 5 BASIC21.14■□□□□ 0.98
Col17a1Q07563 Pcgf1-207ENSMUST00000177177 854 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Col17a1Q07563 Gm29676-202ENSMUST00000222409 364 ntTSL 2 BASIC21.14■□□□□ 0.98
Col17a1Q07563 Prss34-201ENSMUST00000037453 1216 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Col17a1Q07563 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Col17a1Q07563 Rnps1-202ENSMUST00000115371 1617 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Col17a1Q07563 Plekhb1-201ENSMUST00000079176 2079 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
Col17a1Q07563 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
Col17a1Q07563 Spatc1l-201ENSMUST00000009259 1332 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Col17a1Q07563 R3hdml-201ENSMUST00000109416 1094 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
Col17a1Q07563 Prss46-201ENSMUST00000119427 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col17a1Q07563 Aamdc-213ENSMUST00000154853 883 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Col17a1Q07563 Prss46-202ENSMUST00000176403 1257 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col17a1Q07563 Gm29292-201ENSMUST00000186169 766 ntTSL 3 BASIC21.13■□□□□ 0.97
Col17a1Q07563 Ddo-207ENSMUST00000216830 806 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Col17a1Q07563 Sssca1-201ENSMUST00000025885 693 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col17a1Q07563 Dnajc4-201ENSMUST00000025915 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col17a1Q07563 Il1f10-201ENSMUST00000058056 538 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col17a1Q07563 Cthrc1-201ENSMUST00000067072 1166 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col17a1Q07563 Nceh1-202ENSMUST00000091284 830 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Col17a1Q07563 Aqp6-201ENSMUST00000023754 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col17a1Q07563 Tulp2-202ENSMUST00000085331 1525 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Col17a1Q07563 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC21.13■□□□□ 0.97
Col17a1Q07563 Trmt6-201ENSMUST00000039554 2828 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col17a1Q07563 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col17a1Q07563 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col17a1Q07563 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col17a1Q07563 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col17a1Q07563 Dmgdh-201ENSMUST00000048001 2992 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col17a1Q07563 AW822073-202ENSMUST00000204003 1959 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
Col17a1Q07563 Nsg2-203ENSMUST00000109409 641 ntTSL 2 BASIC21.13■□□□□ 0.97
Col17a1Q07563 2610316D01Rik-201ENSMUST00000181047 924 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Col17a1Q07563 Gm28375-201ENSMUST00000185304 430 ntTSL 3 BASIC21.13■□□□□ 0.97
Col17a1Q07563 Gm37666-201ENSMUST00000194110 866 ntBASIC21.13■□□□□ 0.97
Col17a1Q07563 Gm44069-201ENSMUST00000204898 506 ntBASIC21.13■□□□□ 0.97
Col17a1Q07563 Cacng1-201ENSMUST00000021065 1249 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col17a1Q07563 AC156504.2-201ENSMUST00000213800 711 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Col17a1Q07563 Gm3028-201ENSMUST00000213805 1119 ntBASIC21.13■□□□□ 0.97
Col17a1Q07563 Olfr398-201ENSMUST00000053874 945 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
Col17a1Q07563 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col17a1Q07563 Neil1-203ENSMUST00000190245 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col17a1Q07563 Ftcd-201ENSMUST00000001183 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col17a1Q07563 Gnb5-202ENSMUST00000213990 1803 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Col17a1Q07563 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col17a1Q07563 Spint5-201ENSMUST00000103097 443 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col17a1Q07563 Gm12969-201ENSMUST00000120199 1004 ntBASIC21.12■□□□□ 0.97
Col17a1Q07563 Smim5-203ENSMUST00000152171 1113 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col17a1Q07563 Spint5-202ENSMUST00000180193 443 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
Col17a1Q07563 2310074N15Rik-201ENSMUST00000198276 582 ntBASIC21.12■□□□□ 0.97
Col17a1Q07563 Gm45433-201ENSMUST00000209386 247 ntBASIC21.12■□□□□ 0.97
Col17a1Q07563 Rwdd2b-201ENSMUST00000039101 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col17a1Q07563 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col17a1Q07563 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col17a1Q07563 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Col17a1Q07563 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Col17a1Q07563 D630033O11Rik-204ENSMUST00000210588 1358 ntTSL 5 BASIC21.11■□□□□ 0.97
Col17a1Q07563 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 32.3 ms