Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Ogfrl1-201ENSMUST00000027343 4844 ntAPPRIS P1 TSL 3 BASIC14.48□□□□□ -0.09
Sox9Q04887 Mpp4-201ENSMUST00000066374 2344 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
Sox9Q04887 Mpp4-202ENSMUST00000078874 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Sox9Q04887 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Sox9Q04887 Mylk2-201ENSMUST00000028970 2951 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Sox9Q04887 Hs3st3b1-201ENSMUST00000094103 4911 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Sox9Q04887 Bmp4-201ENSMUST00000074077 2064 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Sox9Q04887 Cgnl1-203ENSMUST00000122065 4487 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Sox9Q04887 Gm9252-201ENSMUST00000172364 1602 ntBASIC14.48□□□□□ -0.09
Sox9Q04887 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Sox9Q04887 Gm7324-201ENSMUST00000094051 1647 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
Sox9Q04887 Mapt-201ENSMUST00000100347 1362 ntAPPRIS P4 TSL 1 (best) BASIC14.47□□□□□ -0.09
Sox9Q04887 Ssfa2-202ENSMUST00000111785 5168 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Sox9Q04887 Akap1-201ENSMUST00000018572 3758 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Sox9Q04887 Dhrs3-207ENSMUST00000171001 1349 ntTSL 5 BASIC14.47□□□□□ -0.09
Sox9Q04887 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Sox9Q04887 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Sox9Q04887 Trim68-205ENSMUST00000210855 2301 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Sox9Q04887 Ano8-201ENSMUST00000093450 3653 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Sox9Q04887 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
Sox9Q04887 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Sox9Q04887 Mst1-201ENSMUST00000035211 2262 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Sox9Q04887 Gm36839-201ENSMUST00000222088 2093 ntTSL 5 BASIC14.47□□□□□ -0.09
Sox9Q04887 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Sox9Q04887 Rhox2b-201ENSMUST00000115191 799 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Sox9Q04887 Gm12485-201ENSMUST00000119641 291 ntBASIC14.47□□□□□ -0.09
Sox9Q04887 Egfl7-208ENSMUST00000149789 683 ntTSL 3 BASIC14.47□□□□□ -0.09
Sox9Q04887 Cryaa-201ENSMUST00000019192 1176 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Sox9Q04887 1600017P15Rik-202ENSMUST00000193960 890 ntBASIC14.47□□□□□ -0.09
Sox9Q04887 Gm30437-201ENSMUST00000206086 1201 ntBASIC14.47□□□□□ -0.09
Sox9Q04887 Lsm7-208ENSMUST00000220225 1129 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Sox9Q04887 Gm8598-201ENSMUST00000221184 836 ntBASIC14.47□□□□□ -0.09
Sox9Q04887 Nsd1-205ENSMUST00000224693 852 ntBASIC14.47□□□□□ -0.09
Sox9Q04887 Olfr171-201ENSMUST00000079891 945 ntAPPRIS P2 BASIC14.47□□□□□ -0.09
Sox9Q04887 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Sox9Q04887 Zxdc-202ENSMUST00000075117 4126 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
Sox9Q04887 Dmrtc2-201ENSMUST00000011493 1619 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Sox9Q04887 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Sox9Q04887 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Sox9Q04887 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Sox9Q04887 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Sox9Q04887 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Sox9Q04887 4933435G04Rik-201ENSMUST00000205892 2108 ntBASIC14.47□□□□□ -0.09
Sox9Q04887 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Sox9Q04887 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Sox9Q04887 Fam71f1-204ENSMUST00000166462 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Sox9Q04887 Rexo4-201ENSMUST00000064244 2281 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Sox9Q04887 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Sox9Q04887 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC14.46□□□□□ -0.09
Sox9Q04887 E430024P14Rik-202ENSMUST00000160177 2050 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Sox9Q04887 Fam83g-202ENSMUST00000093019 4778 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Sox9Q04887 Neurog3-201ENSMUST00000050103 1540 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Sox9Q04887 Ablim2-205ENSMUST00000114205 2579 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
Sox9Q04887 Tex19.2-201ENSMUST00000039146 2046 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Sox9Q04887 Gm14780-201ENSMUST00000118387 2737 ntBASIC14.46□□□□□ -0.09
Sox9Q04887 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
Sox9Q04887 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC14.46□□□□□ -0.09
Sox9Q04887 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Sox9Q04887 A930004D18Rik-201ENSMUST00000066163 3217 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Sox9Q04887 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Sox9Q04887 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Sox9Q04887 Adarb1-202ENSMUST00000098374 6584 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Sox9Q04887 Gm12241-201ENSMUST00000118330 726 ntBASIC14.46□□□□□ -0.09
Sox9Q04887 Gm11793-201ENSMUST00000120433 981 ntBASIC14.46□□□□□ -0.09
Sox9Q04887 Tpt1-ps6-201ENSMUST00000121768 523 ntBASIC14.46□□□□□ -0.09
Sox9Q04887 3110053B16Rik-204ENSMUST00000145605 575 ntBASIC14.46□□□□□ -0.09
Sox9Q04887 Gm16315-201ENSMUST00000163009 783 ntTSL 3 BASIC14.46□□□□□ -0.09
Sox9Q04887 Gm27320-201ENSMUST00000184892 109 ntBASIC14.46□□□□□ -0.09
Sox9Q04887 Gm37259-201ENSMUST00000193903 849 ntBASIC14.46□□□□□ -0.09
Sox9Q04887 Ighv8-14-201ENSMUST00000196781 358 ntBASIC14.46□□□□□ -0.09
Sox9Q04887 Gm45865-201ENSMUST00000211815 945 ntBASIC14.46□□□□□ -0.09
Sox9Q04887 Gm33056-201ENSMUST00000213234 1120 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Sox9Q04887 AC155237.1-201ENSMUST00000226196 1279 ntBASIC14.46□□□□□ -0.09
Sox9Q04887 Nr0b2-201ENSMUST00000042706 1132 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Sox9Q04887 Utp23-201ENSMUST00000059599 740 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Sox9Q04887 Aym1-201ENSMUST00000066573 528 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
Sox9Q04887 6430531B16Rik-201ENSMUST00000097970 1161 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
Sox9Q04887 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
Sox9Q04887 H13-202ENSMUST00000089059 1743 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
Sox9Q04887 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Sox9Q04887 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
Sox9Q04887 Nfatc1-204ENSMUST00000170905 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
Sox9Q04887 Msl2-201ENSMUST00000085177 4889 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Sox9Q04887 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Sox9Q04887 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Sox9Q04887 Wdr73-201ENSMUST00000026816 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Sox9Q04887 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Sox9Q04887 Trp53rkb-203ENSMUST00000151826 4426 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Sox9Q04887 Slc23a3-201ENSMUST00000027405 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Sox9Q04887 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC14.45□□□□□ -0.1
Sox9Q04887 Gamt-202ENSMUST00000105363 988 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Sox9Q04887 Pdlim2-204ENSMUST00000127836 920 ntTSL 5 BASIC14.45□□□□□ -0.1
Sox9Q04887 Rpl27a-203ENSMUST00000143107 1158 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Sox9Q04887 Snx19-201ENSMUST00000164099 5762 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Sox9Q04887 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Sox9Q04887 Mfsd4b5-205ENSMUST00000170579 1554 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
Sox9Q04887 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
Sox9Q04887 Gm27682-201ENSMUST00000183930 110 ntBASIC14.45□□□□□ -0.1
Sox9Q04887 Gm36937-201ENSMUST00000192957 429 ntTSL 3 BASIC14.45□□□□□ -0.1
Sox9Q04887 Gm43133-201ENSMUST00000197472 463 ntBASIC14.45□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 29.6 ms