Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Gm26867-201ENSMUST00000180963 3615 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
Rfx1P48377 Dpp6-201ENSMUST00000071500 3826 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.29
Rfx1P48377 Atxn2l-201ENSMUST00000040202 3853 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.29
Rfx1P48377 AI593442-203ENSMUST00000213937 5674 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.29
Rfx1P48377 Slc25a25-204ENSMUST00000113308 2643 ntTSL 5 BASIC16.83■□□□□ 0.28
Rfx1P48377 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Rfx1P48377 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC16.83■□□□□ 0.28
Rfx1P48377 Plch2-207ENSMUST00000139976 5322 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
Rfx1P48377 Tmem255b-201ENSMUST00000167071 1138 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Rfx1P48377 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
Rfx1P48377 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
Rfx1P48377 Gm10459-201ENSMUST00000202708 1155 ntBASIC16.83■□□□□ 0.28
Rfx1P48377 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC16.83■□□□□ 0.28
Rfx1P48377 Gm45747-201ENSMUST00000212203 999 ntBASIC16.83■□□□□ 0.28
Rfx1P48377 Snph-201ENSMUST00000028951 4730 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
Rfx1P48377 Esm1-201ENSMUST00000038144 2097 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Rfx1P48377 9130008F23Rik-201ENSMUST00000068258 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Rfx1P48377 Shisa3-201ENSMUST00000087241 3760 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Rfx1P48377 Clmp-201ENSMUST00000034522 4154 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Rfx1P48377 Prrt3-203ENSMUST00000204268 3741 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Rfx1P48377 Tmprss9-203ENSMUST00000219817 3581 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
Rfx1P48377 Cpxm2-201ENSMUST00000033149 3498 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Rfx1P48377 Arhgef1-203ENSMUST00000117419 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Rfx1P48377 Tigd2-201ENSMUST00000062626 3007 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Rfx1P48377 Ly9-202ENSMUST00000068878 2488 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
Rfx1P48377 Gm26576-201ENSMUST00000181018 1977 ntTSL 5 BASIC16.82■□□□□ 0.28
Rfx1P48377 Eif4g1-205ENSMUST00000115461 5507 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
Rfx1P48377 Ccdc121-201ENSMUST00000058825 1819 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
Rfx1P48377 Gdf10-201ENSMUST00000168727 5210 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Rfx1P48377 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Rfx1P48377 Xkr5-202ENSMUST00000095438 2838 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Rfx1P48377 Lamb2-201ENSMUST00000065014 5629 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Rfx1P48377 Abcg4-208ENSMUST00000161354 3999 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Rfx1P48377 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Rfx1P48377 Gm13884-201ENSMUST00000118103 829 ntBASIC16.82■□□□□ 0.28
Rfx1P48377 Ccnh-202ENSMUST00000163600 1055 ntTSL 5 BASIC16.82■□□□□ 0.28
Rfx1P48377 U2af1l4-216ENSMUST00000166510 835 ntTSL 5 BASIC16.82■□□□□ 0.28
Rfx1P48377 Gm10275-202ENSMUST00000168697 495 ntBASIC16.82■□□□□ 0.28
Rfx1P48377 Rab10os-206ENSMUST00000179908 746 ntTSL 5 BASIC16.82■□□□□ 0.28
Rfx1P48377 Mir8098-201ENSMUST00000184011 137 ntBASIC16.82■□□□□ 0.28
Rfx1P48377 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Rfx1P48377 Thap2-203ENSMUST00000218989 527 ntBASIC16.82■□□□□ 0.28
Rfx1P48377 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Rfx1P48377 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Rfx1P48377 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Rfx1P48377 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC16.82■□□□□ 0.28
Rfx1P48377 Gm10275-201ENSMUST00000092620 635 ntBASIC16.82■□□□□ 0.28
Rfx1P48377 Spata21-201ENSMUST00000051907 2526 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Rfx1P48377 Kcnc2-201ENSMUST00000092175 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Rfx1P48377 Arl4a-205ENSMUST00000146905 3710 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Rfx1P48377 Hoxd3-202ENSMUST00000111982 2413 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Rfx1P48377 Gucy1a2-201ENSMUST00000115733 2243 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
Rfx1P48377 Fut7-202ENSMUST00000100320 2076 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Rfx1P48377 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Rfx1P48377 Dhx30-201ENSMUST00000062368 3806 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Rfx1P48377 Hif1a-201ENSMUST00000021530 4724 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
Rfx1P48377 Slc8b1-204ENSMUST00000111890 2775 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Rfx1P48377 Clcf1-201ENSMUST00000046506 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Rfx1P48377 Tmem9-201ENSMUST00000063719 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Rfx1P48377 Lypd6-201ENSMUST00000053208 3620 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Rfx1P48377 Sema6c-203ENSMUST00000107217 3595 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Rfx1P48377 Txlng-203ENSMUST00000112315 2525 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Rfx1P48377 Parp16-202ENSMUST00000213396 2518 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Rfx1P48377 Fam214b-202ENSMUST00000107956 3107 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
Rfx1P48377 Cmip-201ENSMUST00000095172 2276 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Rfx1P48377 Cdca5-201ENSMUST00000025704 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Rfx1P48377 Coq4-201ENSMUST00000028137 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Rfx1P48377 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Rfx1P48377 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Rfx1P48377 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC16.81■□□□□ 0.28
Rfx1P48377 AC084391.1-201ENSMUST00000200651 141 ntBASIC16.81■□□□□ 0.28
Rfx1P48377 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Rfx1P48377 AC121805.2-201ENSMUST00000218808 2538 ntBASIC16.81■□□□□ 0.28
Rfx1P48377 Kyat1-205ENSMUST00000113662 1850 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
Rfx1P48377 Tmem211-201ENSMUST00000086615 1827 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Rfx1P48377 Mob1a-202ENSMUST00000055261 4412 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Rfx1P48377 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Rfx1P48377 Diaph2-207ENSMUST00000167619 8439 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Rfx1P48377 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Rfx1P48377 Gm18244-201ENSMUST00000219747 1566 ntBASIC16.81■□□□□ 0.28
Rfx1P48377 Nek6-203ENSMUST00000112902 3147 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Rfx1P48377 Col7a1-202ENSMUST00000112070 9250 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
Rfx1P48377 Kmt2e-202ENSMUST00000115128 7317 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Rfx1P48377 Pias3-202ENSMUST00000107076 2858 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Rfx1P48377 Atpaf2-201ENSMUST00000108721 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Rfx1P48377 Osbpl9-202ENSMUST00000084366 3134 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Rfx1P48377 Col25a1-201ENSMUST00000080335 2624 ntAPPRIS P4 TSL 5 BASIC16.8■□□□□ 0.28
Rfx1P48377 Josd2-202ENSMUST00000117324 858 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Rfx1P48377 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
Rfx1P48377 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
Rfx1P48377 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
Rfx1P48377 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Rfx1P48377 Mir7036b-201ENSMUST00000184791 63 ntBASIC16.8■□□□□ 0.28
Rfx1P48377 Gm17971-201ENSMUST00000190239 806 ntBASIC16.8■□□□□ 0.28
Rfx1P48377 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Rfx1P48377 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Rfx1P48377 Pcdhga12-201ENSMUST00000044851 5080 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Rfx1P48377 Tssk4-202ENSMUST00000164809 1686 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Rfx1P48377 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Rfx1P48377 Olfr322-204ENSMUST00000214392 4779 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 48.2 ms