Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC13.4□□□□□ -0.26
Msx1P13297 Kcnab2-202ENSMUST00000105648 1576 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
Msx1P13297 Tmem2-202ENSMUST00000096194 6667 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
Msx1P13297 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Msx1P13297 Drd5-201ENSMUST00000041646 3152 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
Msx1P13297 Col7a1-202ENSMUST00000112070 9250 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
Msx1P13297 Ints1-201ENSMUST00000072607 7102 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
Msx1P13297 Scube1-201ENSMUST00000016907 3991 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Msx1P13297 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Msx1P13297 Nfe2l1-201ENSMUST00000081775 4654 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Msx1P13297 Zscan22-204ENSMUST00000120809 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Msx1P13297 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Msx1P13297 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Msx1P13297 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
Msx1P13297 Hic1-201ENSMUST00000055619 3497 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Msx1P13297 Bag6-202ENSMUST00000166426 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Msx1P13297 Pde10a-202ENSMUST00000089085 7717 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Msx1P13297 Celf1-214ENSMUST00000177642 7806 ntAPPRIS ALT1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Msx1P13297 Gm4875-201ENSMUST00000118257 786 ntBASIC13.39□□□□□ -0.27
Msx1P13297 H2afb1-201ENSMUST00000122446 348 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
Msx1P13297 Gm13994-201ENSMUST00000137397 513 ntTSL 5 BASIC13.39□□□□□ -0.27
Msx1P13297 1700007J10Rik-202ENSMUST00000153431 1111 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Msx1P13297 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Msx1P13297 Gm8602-201ENSMUST00000184045 607 ntBASIC13.39□□□□□ -0.27
Msx1P13297 Mrpl27-201ENSMUST00000025278 756 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Msx1P13297 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Msx1P13297 Cenpm-201ENSMUST00000089155 1109 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Msx1P13297 Rwdd2a-201ENSMUST00000034988 1355 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Msx1P13297 Gm8369-201ENSMUST00000079855 1374 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Msx1P13297 Lims2-201ENSMUST00000025254 1870 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Msx1P13297 Gm3002-201ENSMUST00000170480 1955 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Msx1P13297 Gm3005-202ENSMUST00000178728 1955 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Msx1P13297 Ppp1r3g-201ENSMUST00000132661 2361 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Msx1P13297 Aggf1-201ENSMUST00000022189 3249 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Msx1P13297 Anks1b-213ENSMUST00000182284 2607 ntTSL 5 BASIC13.39□□□□□ -0.27
Msx1P13297 Mocs1-201ENSMUST00000024797 2646 ntTSL 5 BASIC13.39□□□□□ -0.27
Msx1P13297 Gm4793-201ENSMUST00000067468 2616 ntTSL 2 BASIC13.39□□□□□ -0.27
Msx1P13297 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Msx1P13297 Ccdc157-202ENSMUST00000101626 5153 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Msx1P13297 Mybl1-201ENSMUST00000088658 4980 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Msx1P13297 Atp2a3-207ENSMUST00000163326 4606 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
Msx1P13297 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Msx1P13297 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
Msx1P13297 Tcf3-208ENSMUST00000105344 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Msx1P13297 9930104L06Rik-201ENSMUST00000094769 2911 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Msx1P13297 Grin2a-202ENSMUST00000115835 5023 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
Msx1P13297 Elk4-201ENSMUST00000027696 1586 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Msx1P13297 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Msx1P13297 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Msx1P13297 Dis3-201ENSMUST00000042471 5150 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
Msx1P13297 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Msx1P13297 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Msx1P13297 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
Msx1P13297 Atp13a3-202ENSMUST00000100013 7310 ntAPPRIS P4 TSL 5 BASIC13.38□□□□□ -0.27
Msx1P13297 Gm15653-201ENSMUST00000119247 907 ntBASIC13.38□□□□□ -0.27
Msx1P13297 Elobl-203ENSMUST00000121228 704 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
Msx1P13297 1700047K16Rik-201ENSMUST00000145068 886 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Msx1P13297 Gm15904-201ENSMUST00000154515 487 ntTSL 3 BASIC13.38□□□□□ -0.27
Msx1P13297 Gm38182-203ENSMUST00000192984 993 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Msx1P13297 Pcdhgc5-204ENSMUST00000193941 593 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Msx1P13297 Gm45195-201ENSMUST00000205597 1008 ntBASIC13.38□□□□□ -0.27
Msx1P13297 Gm44719-201ENSMUST00000206404 149 ntBASIC13.38□□□□□ -0.27
Msx1P13297 Hsd17b14-205ENSMUST00000210300 797 ntTSL 5 BASIC13.38□□□□□ -0.27
Msx1P13297 Gm9908-201ENSMUST00000211534 448 ntBASIC13.38□□□□□ -0.27
Msx1P13297 AC153962.4-201ENSMUST00000217878 242 ntBASIC13.38□□□□□ -0.27
Msx1P13297 Olfr317-202ENSMUST00000215513 2769 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
Msx1P13297 Gpr137-205ENSMUST00000166115 1845 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Msx1P13297 Sema4c-201ENSMUST00000114991 3773 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Msx1P13297 Scube1-205ENSMUST00000171496 7824 ntAPPRIS P3 TSL 5 BASIC13.38□□□□□ -0.27
Msx1P13297 Myrf-201ENSMUST00000088013 5674 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
Msx1P13297 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Msx1P13297 Vav1-201ENSMUST00000005889 2963 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
Msx1P13297 Tns1-222ENSMUST00000212888 5643 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
Msx1P13297 Gm9115-201ENSMUST00000120192 1348 ntBASIC13.38□□□□□ -0.27
Msx1P13297 Syt8-201ENSMUST00000097939 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Msx1P13297 Trib1-201ENSMUST00000067543 4330 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Msx1P13297 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
Msx1P13297 Mapk8-201ENSMUST00000022504 2587 ntAPPRIS P5 TSL 1 (best) BASIC13.37□□□□□ -0.27
Msx1P13297 Zfp36-202ENSMUST00000209061 2465 ntAPPRIS ALT2 BASIC13.37□□□□□ -0.27
Msx1P13297 Slc25a47-201ENSMUST00000057026 1580 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Msx1P13297 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Msx1P13297 Cobll1-201ENSMUST00000090896 4867 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Msx1P13297 Sergef-201ENSMUST00000033127 1465 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Msx1P13297 Agap1-201ENSMUST00000027521 11921 ntAPPRIS P4 TSL 1 (best) BASIC13.37□□□□□ -0.27
Msx1P13297 Pld3-201ENSMUST00000117095 2282 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Msx1P13297 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Msx1P13297 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Msx1P13297 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Msx1P13297 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Msx1P13297 AC140354.1-201ENSMUST00000219499 2425 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Msx1P13297 Pth2r-201ENSMUST00000027083 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Msx1P13297 B230359F08Rik-201ENSMUST00000103671 426 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
Msx1P13297 Gm22189-201ENSMUST00000103822 86 ntBASIC13.37□□□□□ -0.27
Msx1P13297 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC13.37□□□□□ -0.27
Msx1P13297 Fis1-203ENSMUST00000111097 601 ntTSL 2 BASIC13.37□□□□□ -0.27
Msx1P13297 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC13.37□□□□□ -0.27
Msx1P13297 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC13.37□□□□□ -0.27
Msx1P13297 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC13.37□□□□□ -0.27
Msx1P13297 Mansc4-202ENSMUST00000123367 542 ntAPPRIS ALT2 TSL 2 BASIC13.37□□□□□ -0.27
Msx1P13297 Pigyl-201ENSMUST00000123680 695 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 44.7 ms