Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Gm6018-201ENSMUST00000216090 1306 ntBASIC15.22■□□□□ 0.03
RaraP11416 Smarca5-201ENSMUST00000043359 6113 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RaraP11416 Dnmt3b-204ENSMUST00000088976 4130 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
RaraP11416 Srrm1-203ENSMUST00000105861 3797 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
RaraP11416 Socs7-201ENSMUST00000045540 7015 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RaraP11416 Gm26788-201ENSMUST00000181692 1750 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RaraP11416 Car4-201ENSMUST00000103194 1256 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RaraP11416 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC15.22■□□□□ 0.03
RaraP11416 Edn3-203ENSMUST00000140908 731 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
RaraP11416 Gm11201-201ENSMUST00000143473 701 ntTSL 3 BASIC15.22■□□□□ 0.03
RaraP11416 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC15.22■□□□□ 0.03
RaraP11416 Gm5712-201ENSMUST00000199748 1043 ntBASIC15.22■□□□□ 0.03
RaraP11416 Wdr45-225ENSMUST00000208443 1172 ntTSL 5 BASIC15.22■□□□□ 0.03
RaraP11416 AC131690.1-201ENSMUST00000218406 374 ntBASIC15.22■□□□□ 0.03
RaraP11416 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
RaraP11416 Dars-202ENSMUST00000064309 645 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RaraP11416 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RaraP11416 Rnf114-201ENSMUST00000078050 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RaraP11416 Nudt18-203ENSMUST00000228768 1578 ntBASIC15.22■□□□□ 0.03
RaraP11416 Mpl-203ENSMUST00000106375 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
RaraP11416 Osbpl9-202ENSMUST00000084366 3134 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RaraP11416 Erp29-203ENSMUST00000130451 5204 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RaraP11416 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
RaraP11416 Twf2-204ENSMUST00000188650 1508 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RaraP11416 Cbs-202ENSMUST00000078509 2403 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
RaraP11416 Qsox1-202ENSMUST00000111764 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
RaraP11416 Axdnd1-204ENSMUST00000178036 3586 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
RaraP11416 Kif9-204ENSMUST00000198043 2233 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
RaraP11416 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
RaraP11416 Stra8-203ENSMUST00000114999 1455 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
RaraP11416 Spata5-209ENSMUST00000198968 2916 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
RaraP11416 Prrg3-203ENSMUST00000170096 3408 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RaraP11416 Samd4-203ENSMUST00000125113 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
RaraP11416 Tmem254c-202ENSMUST00000100819 1211 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RaraP11416 Mmab-203ENSMUST00000123256 1277 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
RaraP11416 Gm25911-201ENSMUST00000157621 56 ntBASIC15.21■□□□□ 0.03
RaraP11416 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC15.21■□□□□ 0.03
RaraP11416 Gm44608-201ENSMUST00000206827 855 ntBASIC15.21■□□□□ 0.03
RaraP11416 Gm44771-201ENSMUST00000206975 626 ntBASIC15.21■□□□□ 0.03
RaraP11416 AW822252-206ENSMUST00000208904 237 ntBASIC15.21■□□□□ 0.03
RaraP11416 0610005C13Rik-201ENSMUST00000209416 856 ntTSL 5 BASIC15.21■□□□□ 0.03
RaraP11416 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RaraP11416 Hsd17b14-205ENSMUST00000210300 797 ntTSL 5 BASIC15.21■□□□□ 0.03
RaraP11416 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
RaraP11416 Elmo3-202ENSMUST00000212033 2351 ntTSL 5 BASIC15.21■□□□□ 0.03
RaraP11416 Slc7a7-202ENSMUST00000195970 2057 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
RaraP11416 Ilvbl-203ENSMUST00000218215 2331 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
RaraP11416 CT025610.1-201ENSMUST00000224552 1786 ntBASIC15.21■□□□□ 0.02
RaraP11416 Poli-205ENSMUST00000161542 2736 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
RaraP11416 Zbtb17-201ENSMUST00000006377 2722 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
RaraP11416 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
RaraP11416 Eif4ebp2-201ENSMUST00000020288 5784 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
RaraP11416 E230013L22Rik-201ENSMUST00000180408 1856 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RaraP11416 Wrap53-201ENSMUST00000048139 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RaraP11416 Cluh-202ENSMUST00000117818 4284 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
RaraP11416 Cog7-201ENSMUST00000057576 2902 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RaraP11416 Erg-203ENSMUST00000113848 2139 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RaraP11416 Foxs1-201ENSMUST00000099200 1311 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
RaraP11416 Slc4a5-202ENSMUST00000113899 5039 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
RaraP11416 P4ha1-202ENSMUST00000092512 2387 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RaraP11416 Nek7-202ENSMUST00000186017 5258 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RaraP11416 Gm28729-201ENSMUST00000190704 1964 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
RaraP11416 Rubcn-204ENSMUST00000119810 3371 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
RaraP11416 Hnrnpul1-201ENSMUST00000043765 3354 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RaraP11416 Ak1-202ENSMUST00000113277 2063 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RaraP11416 Fam172a-203ENSMUST00000163257 1436 ntAPPRIS P4 TSL 5 BASIC15.2■□□□□ 0.02
RaraP11416 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
RaraP11416 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
RaraP11416 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RaraP11416 Zfp740-201ENSMUST00000118729 4241 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
RaraP11416 Kmt5c-203ENSMUST00000108583 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RaraP11416 Ctbp1-212ENSMUST00000202962 3595 ntTSL 2 BASIC15.2■□□□□ 0.02
RaraP11416 Crybb2-202ENSMUST00000112336 906 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RaraP11416 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
RaraP11416 Nabp1-202ENSMUST00000185534 708 ntTSL 2 BASIC15.2■□□□□ 0.02
RaraP11416 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC15.2■□□□□ 0.02
RaraP11416 5830408C22Rik-201ENSMUST00000210072 1115 ntTSL 5 BASIC15.2■□□□□ 0.02
RaraP11416 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
RaraP11416 Gan-201ENSMUST00000064488 2652 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RaraP11416 BC001981-202ENSMUST00000191393 1545 ntBASIC15.2■□□□□ 0.02
RaraP11416 Cep295nl-202ENSMUST00000168100 1602 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
RaraP11416 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RaraP11416 Fbxo10-201ENSMUST00000052236 4635 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RaraP11416 Ppig-201ENSMUST00000040915 6245 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RaraP11416 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
RaraP11416 Zkscan17-201ENSMUST00000013262 4064 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RaraP11416 Col5a3-201ENSMUST00000004201 6119 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RaraP11416 Fzd7-201ENSMUST00000114246 4532 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
RaraP11416 Plxdc2-203ENSMUST00000114703 2061 ntTSL 5 BASIC15.2■□□□□ 0.02
RaraP11416 Clcf1-201ENSMUST00000046506 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RaraP11416 Samd4b-204ENSMUST00000208199 4391 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
RaraP11416 Krt16-201ENSMUST00000007280 1565 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RaraP11416 Lin54-208ENSMUST00000149714 3869 ntTSL 5 BASIC15.19■□□□□ 0.02
RaraP11416 Zfp169-203ENSMUST00000176176 2162 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RaraP11416 Rpn2-202ENSMUST00000116380 2756 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RaraP11416 Eya4-206ENSMUST00000219315 3100 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
RaraP11416 Arhgef1-203ENSMUST00000117419 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
RaraP11416 Slc25a37-201ENSMUST00000037064 4174 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RaraP11416 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
RaraP11416 Gm28539-201ENSMUST00000190050 2982 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 41.6 ms