Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Rsph1-201ENSMUST00000024832 1164 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col11a1Q61245 Ecscr-201ENSMUST00000097618 1114 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col11a1Q61245 Uckl1-201ENSMUST00000057816 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col11a1Q61245 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col11a1Q61245 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col11a1Q61245 Dda1-206ENSMUST00000138892 1738 ntTSL 3 BASIC15.47■□□□□ 0.07
Col11a1Q61245 Gm10097-201ENSMUST00000180100 2784 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
Col11a1Q61245 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
Col11a1Q61245 Smg9-201ENSMUST00000002280 2242 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col11a1Q61245 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col11a1Q61245 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col11a1Q61245 Map2k7-203ENSMUST00000110994 1600 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Col11a1Q61245 Gm37885-201ENSMUST00000192568 1391 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Col11a1Q61245 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Col11a1Q61245 Gm44579-201ENSMUST00000142443 2064 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
Col11a1Q61245 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
Col11a1Q61245 Clcf1-201ENSMUST00000046506 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col11a1Q61245 B230209E15Rik-201ENSMUST00000209115 1597 ntTSL 5 BASIC15.46■□□□□ 0.07
Col11a1Q61245 Stx4a-202ENSMUST00000121705 1316 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col11a1Q61245 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col11a1Q61245 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col11a1Q61245 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col11a1Q61245 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC15.46■□□□□ 0.07
Col11a1Q61245 Gm12012-201ENSMUST00000118857 1066 ntBASIC15.46■□□□□ 0.07
Col11a1Q61245 Gm12363-201ENSMUST00000122250 668 ntBASIC15.46■□□□□ 0.07
Col11a1Q61245 Pisd-ps1-203ENSMUST00000145164 789 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Col11a1Q61245 Gm16191-202ENSMUST00000148464 484 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Col11a1Q61245 1700066O22Rik-203ENSMUST00000150994 961 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Col11a1Q61245 Spata3-211ENSMUST00000159876 760 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
Col11a1Q61245 Smad7-204ENSMUST00000174411 769 ntTSL 5 BASIC15.46■□□□□ 0.07
Col11a1Q61245 Gm16505-201ENSMUST00000179981 232 ntBASIC15.46■□□□□ 0.07
Col11a1Q61245 Fgl1-201ENSMUST00000034003 1120 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col11a1Q61245 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col11a1Q61245 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC15.46■□□□□ 0.07
Col11a1Q61245 Actc1-201ENSMUST00000090269 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col11a1Q61245 Cyp1a2-201ENSMUST00000034860 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col11a1Q61245 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col11a1Q61245 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col11a1Q61245 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
Col11a1Q61245 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col11a1Q61245 Eno2-216ENSMUST00000204896 1640 ntTSL 5 BASIC15.46■□□□□ 0.07
Col11a1Q61245 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC15.46■□□□□ 0.07
Col11a1Q61245 Plekhb1-203ENSMUST00000107044 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col11a1Q61245 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col11a1Q61245 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
Col11a1Q61245 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC15.46■□□□□ 0.06
Col11a1Q61245 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC15.46■□□□□ 0.06
Col11a1Q61245 Sdccag8-202ENSMUST00000056773 1551 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
Col11a1Q61245 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.06
Col11a1Q61245 Atrip-201ENSMUST00000045011 2572 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.06
Col11a1Q61245 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
Col11a1Q61245 N6amt1-203ENSMUST00000118310 1700 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
Col11a1Q61245 Acbd5-203ENSMUST00000114526 3725 ntAPPRIS P4 TSL 1 (best) BASIC15.45■□□□□ 0.06
Col11a1Q61245 Gm43289-201ENSMUST00000200537 1475 ntBASIC15.45■□□□□ 0.06
Col11a1Q61245 Pafah1b3-202ENSMUST00000108410 689 ntTSL 3 BASIC15.45■□□□□ 0.06
Col11a1Q61245 1700003G18Rik-201ENSMUST00000140689 633 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Col11a1Q61245 Tead1-207ENSMUST00000165036 1248 ntTSL 5 BASIC15.45■□□□□ 0.06
Col11a1Q61245 Tead1-212ENSMUST00000171197 1074 ntTSL 5 BASIC15.45■□□□□ 0.06
Col11a1Q61245 Treml1-201ENSMUST00000024792 1235 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Col11a1Q61245 Slc30a2-201ENSMUST00000081094 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Col11a1Q61245 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Col11a1Q61245 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Col11a1Q61245 Alas1-201ENSMUST00000074082 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Col11a1Q61245 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Col11a1Q61245 Tnfaip8-207ENSMUST00000148159 1921 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Col11a1Q61245 Pou5f2-201ENSMUST00000175955 1394 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
Col11a1Q61245 Rnf207-201ENSMUST00000076183 2466 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Col11a1Q61245 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Col11a1Q61245 Mff-201ENSMUST00000073025 1706 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Col11a1Q61245 2310022A10Rik-204ENSMUST00000187032 1871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Col11a1Q61245 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Col11a1Q61245 Etfdh-201ENSMUST00000029386 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Col11a1Q61245 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Col11a1Q61245 Gm24830-201ENSMUST00000102024 166 ntBASIC15.45■□□□□ 0.06
Col11a1Q61245 Etfrf1-202ENSMUST00000111719 968 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
Col11a1Q61245 Thoc6-203ENSMUST00000115489 1083 ntTSL 5 BASIC15.45■□□□□ 0.06
Col11a1Q61245 Fbxw4-203ENSMUST00000160003 387 ntTSL 3 BASIC15.45■□□□□ 0.06
Col11a1Q61245 Gm25890-201ENSMUST00000177643 165 ntBASIC15.45■□□□□ 0.06
Col11a1Q61245 Rnu1b2-201ENSMUST00000178073 165 ntBASIC15.45■□□□□ 0.06
Col11a1Q61245 Rnu1b1-201ENSMUST00000178250 165 ntBASIC15.45■□□□□ 0.06
Col11a1Q61245 Gm22614-201ENSMUST00000178300 165 ntBASIC15.45■□□□□ 0.06
Col11a1Q61245 Ctrc-201ENSMUST00000037059 951 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
Col11a1Q61245 Gm22042-201ENSMUST00000082989 165 ntBASIC15.45■□□□□ 0.06
Col11a1Q61245 Gm26232-201ENSMUST00000083360 166 ntBASIC15.45■□□□□ 0.06
Col11a1Q61245 Gm24136-201ENSMUST00000083374 165 ntBASIC15.45■□□□□ 0.06
Col11a1Q61245 Rnu1b6-201ENSMUST00000083839 166 ntBASIC15.45■□□□□ 0.06
Col11a1Q61245 Gm26110-201ENSMUST00000083971 165 ntBASIC15.45■□□□□ 0.06
Col11a1Q61245 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Col11a1Q61245 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Col11a1Q61245 9930104L06Rik-201ENSMUST00000094769 2911 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Col11a1Q61245 Mlkl-201ENSMUST00000056157 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Col11a1Q61245 Gm43650-201ENSMUST00000197337 1382 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Col11a1Q61245 Gm30214-201ENSMUST00000199271 1383 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Col11a1Q61245 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Col11a1Q61245 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC15.44■□□□□ 0.06
Col11a1Q61245 Gm11222-201ENSMUST00000119005 738 ntBASIC15.44■□□□□ 0.06
Col11a1Q61245 Gm15829-201ENSMUST00000145415 869 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Col11a1Q61245 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Col11a1Q61245 Mymx-203ENSMUST00000178858 804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Col11a1Q61245 1700011D18Rik-201ENSMUST00000205762 277 ntBASIC15.44■□□□□ 0.06
Retrieved 100 of 76,532 protein–RNA pairs in 28 ms