Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Taf6-201ENSMUST00000048698 2304 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Sox3P53784 Shmt1-201ENSMUST00000018744 2858 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Sox3P53784 Slc8a3-203ENSMUST00000182208 3433 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Sox3P53784 Pelp1-201ENSMUST00000019065 3435 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Sox3P53784 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Sox3P53784 Kcnj12-201ENSMUST00000041944 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Sox3P53784 Os9-201ENSMUST00000080975 2458 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Sox3P53784 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Sox3P53784 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Sox3P53784 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Sox3P53784 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Sox3P53784 Cblb-204ENSMUST00000227062 3728 ntAPPRIS P2 BASIC13.54□□□□□ -0.24
Sox3P53784 Plxdc2-203ENSMUST00000114703 2061 ntTSL 5 BASIC13.54□□□□□ -0.24
Sox3P53784 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC13.54□□□□□ -0.24
Sox3P53784 Slc4a1-201ENSMUST00000006749 4545 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Sox3P53784 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
Sox3P53784 Rnf150-201ENSMUST00000078525 9682 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Sox3P53784 Gm8131-201ENSMUST00000213783 1570 ntBASIC13.54□□□□□ -0.24
Sox3P53784 Zfp606-201ENSMUST00000098822 4748 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Sox3P53784 Etfrf1-205ENSMUST00000111724 1618 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Sox3P53784 Odf2-203ENSMUST00000113755 2305 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Sox3P53784 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Sox3P53784 Pola2-201ENSMUST00000025752 2424 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Sox3P53784 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Sox3P53784 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Sox3P53784 Tub-202ENSMUST00000119474 2097 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Sox3P53784 Ccdc27-201ENSMUST00000047207 2089 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Sox3P53784 Slit1-202ENSMUST00000166496 4556 ntTSL 5 BASIC13.53□□□□□ -0.24
Sox3P53784 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Sox3P53784 Cbln4-201ENSMUST00000087950 2902 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Sox3P53784 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC13.53□□□□□ -0.24
Sox3P53784 Defb30-203ENSMUST00000111208 503 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Sox3P53784 Defb30-204ENSMUST00000111209 721 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Sox3P53784 E130201H02Rik-201ENSMUST00000123576 851 ntBASIC13.53□□□□□ -0.24
Sox3P53784 Pigyl-201ENSMUST00000123680 695 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
Sox3P53784 C8g-201ENSMUST00000015227 822 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Sox3P53784 Tmem217-202ENSMUST00000168339 812 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Sox3P53784 Gm42612-201ENSMUST00000197986 623 ntBASIC13.53□□□□□ -0.24
Sox3P53784 Gm43170-201ENSMUST00000199827 612 ntBASIC13.53□□□□□ -0.24
Sox3P53784 Gm7556-201ENSMUST00000201178 1084 ntBASIC13.53□□□□□ -0.24
Sox3P53784 Dmkn-201ENSMUST00000041703 662 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Sox3P53784 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Sox3P53784 Pcgf1-201ENSMUST00000092614 866 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Sox3P53784 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
Sox3P53784 Foxo3-203ENSMUST00000105502 6848 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Sox3P53784 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
Sox3P53784 Zfp574-202ENSMUST00000179556 4140 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Sox3P53784 Ldhal6b-201ENSMUST00000189788 1445 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
Sox3P53784 Trp53bp2-201ENSMUST00000117245 4361 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
Sox3P53784 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC13.53□□□□□ -0.24
Sox3P53784 Gtf2h4-207ENSMUST00000160734 1569 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
Sox3P53784 Gm8096-201ENSMUST00000209921 1591 ntBASIC13.53□□□□□ -0.24
Sox3P53784 Klhl21-201ENSMUST00000097773 3986 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Sox3P53784 Oas1a-201ENSMUST00000080322 1885 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Sox3P53784 Cdk11b-203ENSMUST00000105600 3170 ntAPPRIS P3 TSL 5 BASIC13.53□□□□□ -0.24
Sox3P53784 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Sox3P53784 Gnl3-201ENSMUST00000037739 1947 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Sox3P53784 Tfe3-201ENSMUST00000077680 3277 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Sox3P53784 Tgfbr3-201ENSMUST00000031224 6087 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Sox3P53784 Dimt1-201ENSMUST00000022203 2051 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Sox3P53784 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.24
Sox3P53784 Ociad2-204ENSMUST00000200830 2384 ntTSL 3 BASIC13.52□□□□□ -0.24
Sox3P53784 Specc1-209ENSMUST00000201671 2523 ntTSL 5 BASIC13.52□□□□□ -0.24
Sox3P53784 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Sox3P53784 App-204ENSMUST00000227021 3264 ntAPPRIS ALT2 BASIC13.52□□□□□ -0.24
Sox3P53784 Casc4-203ENSMUST00000089915 3475 ntTSL 2 BASIC13.52□□□□□ -0.25
Sox3P53784 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC13.52□□□□□ -0.25
Sox3P53784 Gm15491-201ENSMUST00000133963 751 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Sox3P53784 Gm13994-201ENSMUST00000137397 513 ntTSL 5 BASIC13.52□□□□□ -0.25
Sox3P53784 Mturn-202ENSMUST00000187701 503 ntTSL 5 BASIC13.52□□□□□ -0.25
Sox3P53784 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Sox3P53784 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC13.52□□□□□ -0.25
Sox3P53784 Gale-201ENSMUST00000102540 1537 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Sox3P53784 Hnrnpa2b1-210ENSMUST00000204188 1518 ntTSL 5 BASIC13.52□□□□□ -0.25
Sox3P53784 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Sox3P53784 Gprc5c-208ENSMUST00000177952 1809 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
Sox3P53784 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC13.52□□□□□ -0.25
Sox3P53784 Gm9932-201ENSMUST00000194154 2116 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Sox3P53784 Slc7a7-209ENSMUST00000226753 2126 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
Sox3P53784 Poli-202ENSMUST00000121674 2778 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Sox3P53784 Farp2-202ENSMUST00000122402 2816 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Sox3P53784 Alox5-201ENSMUST00000026795 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Sox3P53784 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
Sox3P53784 Itgav-201ENSMUST00000028499 7054 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Sox3P53784 Atp2b3-202ENSMUST00000088429 4483 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sox3P53784 Csnk1d-201ENSMUST00000018274 3675 ntAPPRIS P4 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sox3P53784 Mfsd1-201ENSMUST00000029344 3011 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sox3P53784 Lipo3-201ENSMUST00000025694 2768 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sox3P53784 Pxdn-201ENSMUST00000118321 2698 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Sox3P53784 Lysmd3-201ENSMUST00000049055 2338 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Sox3P53784 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sox3P53784 Smarca5-201ENSMUST00000043359 6113 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sox3P53784 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC13.51□□□□□ -0.25
Sox3P53784 Gckr-201ENSMUST00000072228 2014 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sox3P53784 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sox3P53784 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sox3P53784 Dis3-201ENSMUST00000042471 5150 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
Sox3P53784 Ephb1-201ENSMUST00000035129 4667 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sox3P53784 Gm5320-201ENSMUST00000207163 1519 ntBASIC13.51□□□□□ -0.25
Sox3P53784 Ldb3-207ENSMUST00000227819 1499 ntBASIC13.51□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 88 ms