Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Gm44100-201ENSMUST00000204329 436 ntBASIC18.3■□□□□ 0.52
Col18a1P39061 Gm5129-201ENSMUST00000065372 300 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Col18a1P39061 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col18a1P39061 Cstf3-201ENSMUST00000028599 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col18a1P39061 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col18a1P39061 Klhl26-204ENSMUST00000209567 2615 ntTSL 3 BASIC18.29■□□□□ 0.52
Col18a1P39061 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Col18a1P39061 Camk2b-203ENSMUST00000066431 1603 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
Col18a1P39061 Nr2f1-203ENSMUST00000127137 991 ntTSL 5 BASIC18.29■□□□□ 0.52
Col18a1P39061 Gm14597-202ENSMUST00000129769 715 ntAPPRIS P5 TSL 3 BASIC18.29■□□□□ 0.52
Col18a1P39061 Gm15395-201ENSMUST00000153724 702 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Col18a1P39061 Cmtm1-201ENSMUST00000159039 1130 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col18a1P39061 Gm16555-201ENSMUST00000159971 1199 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Col18a1P39061 Gm17087-201ENSMUST00000184183 471 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Col18a1P39061 Olfr1423-201ENSMUST00000087831 933 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Col18a1P39061 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col18a1P39061 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col18a1P39061 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col18a1P39061 Gm10787-201ENSMUST00000099552 1548 ntTSL 2 BASIC18.29■□□□□ 0.52
Col18a1P39061 Glipr2-202ENSMUST00000107855 1816 ntTSL 2 BASIC18.29■□□□□ 0.52
Col18a1P39061 Eif4e2-206ENSMUST00000113233 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col18a1P39061 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col18a1P39061 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC18.28■□□□□ 0.52
Col18a1P39061 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col18a1P39061 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col18a1P39061 Vash1-201ENSMUST00000021681 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col18a1P39061 Ccdc28b-202ENSMUST00000106035 821 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Col18a1P39061 E130114P18Rik-202ENSMUST00000107068 1132 ntAPPRIS P5 TSL 3 BASIC18.28■□□□□ 0.52
Col18a1P39061 Gm43701-201ENSMUST00000202047 391 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Col18a1P39061 Blvrb-201ENSMUST00000037399 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col18a1P39061 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col18a1P39061 Spryd3-203ENSMUST00000154032 2456 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Col18a1P39061 Efemp1-201ENSMUST00000020759 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col18a1P39061 Pias3-203ENSMUST00000107077 2695 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Col18a1P39061 Men1-208ENSMUST00000113504 2663 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col18a1P39061 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
Col18a1P39061 Gas2l2-201ENSMUST00000052521 2610 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col18a1P39061 Adra1b-204ENSMUST00000167574 3047 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col18a1P39061 Tada3-202ENSMUST00000043333 1708 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Col18a1P39061 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col18a1P39061 Atp5d-202ENSMUST00000105366 781 ntTSL 2 BASIC18.27■□□□□ 0.52
Col18a1P39061 Nmb-202ENSMUST00000119428 678 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
Col18a1P39061 Naa60-207ENSMUST00000150655 1166 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
Col18a1P39061 Gng2-205ENSMUST00000161247 419 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
Col18a1P39061 Adtrp-204ENSMUST00000179758 1046 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
Col18a1P39061 Gm43830-201ENSMUST00000198760 1067 ntBASIC18.27■□□□□ 0.52
Col18a1P39061 4930502A04Rik-201ENSMUST00000214059 865 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Col18a1P39061 AC162938.2-203ENSMUST00000216604 1134 ntTSL 5 BASIC18.27■□□□□ 0.52
Col18a1P39061 AC069562.3-201ENSMUST00000225387 587 ntBASIC18.27■□□□□ 0.52
Col18a1P39061 Treml1-205ENSMUST00000225849 974 ntAPPRIS ALT2 BASIC18.27■□□□□ 0.52
Col18a1P39061 H2-Oa-201ENSMUST00000025192 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col18a1P39061 Nppc-201ENSMUST00000027449 1042 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col18a1P39061 AI849053-201ENSMUST00000181021 2658 ntTSL 3 BASIC18.27■□□□□ 0.52
Col18a1P39061 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col18a1P39061 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col18a1P39061 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col18a1P39061 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col18a1P39061 Col25a1-201ENSMUST00000080335 2624 ntAPPRIS P4 TSL 5 BASIC18.27■□□□□ 0.51
Col18a1P39061 Gm19221-201ENSMUST00000221827 1477 ntBASIC18.27■□□□□ 0.51
Col18a1P39061 Gm12616-201ENSMUST00000118594 382 ntBASIC18.27■□□□□ 0.51
Col18a1P39061 P2rx4-204ENSMUST00000139631 1030 ntTSL 5 BASIC18.27■□□□□ 0.51
Col18a1P39061 P2rx4-206ENSMUST00000142664 1111 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
Col18a1P39061 Gm20457-201ENSMUST00000173374 682 ntTSL 3 BASIC18.27■□□□□ 0.51
Col18a1P39061 Gm12624-201ENSMUST00000177615 382 ntBASIC18.27■□□□□ 0.51
Col18a1P39061 Gm12621-201ENSMUST00000177760 382 ntBASIC18.27■□□□□ 0.51
Col18a1P39061 Gm12615-201ENSMUST00000177970 382 ntBASIC18.27■□□□□ 0.51
Col18a1P39061 Gm12622-201ENSMUST00000177975 382 ntBASIC18.27■□□□□ 0.51
Col18a1P39061 Gm12627-201ENSMUST00000178412 382 ntBASIC18.27■□□□□ 0.51
Col18a1P39061 Gm12625-201ENSMUST00000179122 382 ntBASIC18.27■□□□□ 0.51
Col18a1P39061 Gm12614-201ENSMUST00000179586 382 ntBASIC18.27■□□□□ 0.51
Col18a1P39061 Gm12613-201ENSMUST00000180323 382 ntBASIC18.27■□□□□ 0.51
Col18a1P39061 4930594M17Rik-201ENSMUST00000181204 1033 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
Col18a1P39061 Gm26956-201ENSMUST00000182176 986 ntBASIC18.27■□□□□ 0.51
Col18a1P39061 Cga-201ENSMUST00000029975 687 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Col18a1P39061 Asb8-201ENSMUST00000059112 1049 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Col18a1P39061 Dsn1-202ENSMUST00000103130 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col18a1P39061 Slc7a7-202ENSMUST00000195970 2057 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Col18a1P39061 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col18a1P39061 7420426K07Rik-201ENSMUST00000098460 1504 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
Col18a1P39061 2900005J15Rik-202ENSMUST00000171190 2025 ntBASIC18.26■□□□□ 0.51
Col18a1P39061 Hcrtr1-201ENSMUST00000030562 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col18a1P39061 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col18a1P39061 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col18a1P39061 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col18a1P39061 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Col18a1P39061 Slc38a11-201ENSMUST00000112420 1606 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col18a1P39061 Gm16066-201ENSMUST00000118575 1086 ntTSL 3 BASIC18.26■□□□□ 0.51
Col18a1P39061 Gm14109-201ENSMUST00000118814 309 ntBASIC18.26■□□□□ 0.51
Col18a1P39061 Gm454-201ENSMUST00000160126 751 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Col18a1P39061 Gm13381-202ENSMUST00000177012 640 ntTSL 5 BASIC18.26■□□□□ 0.51
Col18a1P39061 Gm29054-201ENSMUST00000187589 1185 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Col18a1P39061 Gm5051-201ENSMUST00000204085 485 ntBASIC18.26■□□□□ 0.51
Col18a1P39061 Gm8385-201ENSMUST00000058999 643 ntBASIC18.26■□□□□ 0.51
Col18a1P39061 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Col18a1P39061 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col18a1P39061 Cldn18-204ENSMUST00000136429 1409 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Col18a1P39061 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col18a1P39061 Tmem17-201ENSMUST00000059319 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col18a1P39061 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col18a1P39061 Slc25a19-212ENSMUST00000178003 2614 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms