Protein–RNA interactions for Protein: A3KFM7

Chd6, Chromodomain-helicase-DNA-binding protein 6, mousemouse

Predictions only

Length 2,711 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd6A3KFM7 Htatsf1-201ENSMUST00000088652 2810 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Chd6A3KFM7 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC11.3□□□□□ -0.6
Chd6A3KFM7 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC11.3□□□□□ -0.6
Chd6A3KFM7 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Chd6A3KFM7 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Chd6A3KFM7 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Chd6A3KFM7 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Chd6A3KFM7 Nphs1os-201ENSMUST00000152625 1339 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Chd6A3KFM7 Gngt2-205ENSMUST00000107711 563 ntAPPRIS P1 TSL 2 BASIC11.29□□□□□ -0.6
Chd6A3KFM7 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC11.29□□□□□ -0.6
Chd6A3KFM7 Gm14809-201ENSMUST00000152025 695 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Chd6A3KFM7 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Chd6A3KFM7 Rmrp-201ENSMUST00000157463 271 ntBASIC11.29□□□□□ -0.6
Chd6A3KFM7 Mospd4-201ENSMUST00000180618 576 ntBASIC11.29□□□□□ -0.6
Chd6A3KFM7 Gm9678-201ENSMUST00000198979 1149 ntBASIC11.29□□□□□ -0.6
Chd6A3KFM7 Gm45564-201ENSMUST00000210460 530 ntTSL 5 BASIC11.29□□□□□ -0.6
Chd6A3KFM7 Gm6458-201ENSMUST00000211573 635 ntBASIC11.29□□□□□ -0.6
Chd6A3KFM7 AL732506.1-201ENSMUST00000226420 281 ntBASIC11.29□□□□□ -0.6
Chd6A3KFM7 Fscn2-201ENSMUST00000026445 1713 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Chd6A3KFM7 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Chd6A3KFM7 Mfap4-202ENSMUST00000064783 1722 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
Chd6A3KFM7 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Chd6A3KFM7 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Chd6A3KFM7 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Chd6A3KFM7 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Chd6A3KFM7 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Chd6A3KFM7 Slc35f4-205ENSMUST00000146164 2480 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Chd6A3KFM7 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC11.29□□□□□ -0.6
Chd6A3KFM7 Map2k7-202ENSMUST00000062686 3525 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Chd6A3KFM7 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Chd6A3KFM7 Eif4ebp2-202ENSMUST00000167087 1422 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
Chd6A3KFM7 Ppcdc-209ENSMUST00000214624 1814 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Chd6A3KFM7 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Chd6A3KFM7 Mageb17-ps-201ENSMUST00000117902 919 ntBASIC11.29□□□□□ -0.6
Chd6A3KFM7 Gm24548-201ENSMUST00000158650 108 ntBASIC11.29□□□□□ -0.6
Chd6A3KFM7 Tex9-206ENSMUST00000183574 1264 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Chd6A3KFM7 Gm35822-201ENSMUST00000204954 562 ntTSL 3 BASIC11.29□□□□□ -0.6
Chd6A3KFM7 Pgam2-201ENSMUST00000020768 840 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Chd6A3KFM7 Rps5-201ENSMUST00000004554 761 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Chd6A3KFM7 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Chd6A3KFM7 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Chd6A3KFM7 Mphosph8-201ENSMUST00000116468 2939 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Chd6A3KFM7 Ywhag-205ENSMUST00000198270 1610 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
Chd6A3KFM7 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Chd6A3KFM7 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Chd6A3KFM7 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Chd6A3KFM7 Esco1-203ENSMUST00000115864 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Chd6A3KFM7 Camkv-201ENSMUST00000035700 3277 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Chd6A3KFM7 Csnk1d-201ENSMUST00000018274 3675 ntAPPRIS P4 TSL 1 (best) BASIC11.29□□□□□ -0.6
Chd6A3KFM7 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
Chd6A3KFM7 Snx17-201ENSMUST00000031029 2018 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Chd6A3KFM7 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Chd6A3KFM7 Uox-202ENSMUST00000121133 768 ntTSL 5 BASIC11.29□□□□□ -0.6
Chd6A3KFM7 Gm15046-201ENSMUST00000130153 408 ntTSL 3 BASIC11.29□□□□□ -0.6
Chd6A3KFM7 Gm12690-201ENSMUST00000132108 354 ntTSL 3 BASIC11.29□□□□□ -0.6
Chd6A3KFM7 Gm53-203ENSMUST00000143887 757 ntTSL 3 BASIC11.29□□□□□ -0.6
Chd6A3KFM7 Pisd-ps1-203ENSMUST00000145164 789 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Chd6A3KFM7 4930407G08Rik-201ENSMUST00000145831 698 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Chd6A3KFM7 Gm5741-201ENSMUST00000177563 328 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Chd6A3KFM7 Gm9358-201ENSMUST00000183067 927 ntBASIC11.29□□□□□ -0.6
Chd6A3KFM7 Gm38223-201ENSMUST00000194484 695 ntBASIC11.29□□□□□ -0.6
Chd6A3KFM7 Gm38317-201ENSMUST00000195564 343 ntBASIC11.29□□□□□ -0.6
Chd6A3KFM7 Gm42929-201ENSMUST00000198374 1286 ntBASIC11.29□□□□□ -0.6
Chd6A3KFM7 Vmo1-201ENSMUST00000021179 672 ntAPPRIS P1 TSL 2 BASIC11.29□□□□□ -0.6
Chd6A3KFM7 AC140375.1-201ENSMUST00000225421 694 ntBASIC11.29□□□□□ -0.6
Chd6A3KFM7 Spcs1-203ENSMUST00000226374 592 ntBASIC11.29□□□□□ -0.6
Chd6A3KFM7 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Chd6A3KFM7 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Chd6A3KFM7 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
Chd6A3KFM7 Atp4b-201ENSMUST00000033826 1378 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Chd6A3KFM7 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Chd6A3KFM7 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Chd6A3KFM7 Cd79a-201ENSMUST00000003469 1457 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Chd6A3KFM7 Lrrc56-201ENSMUST00000047093 2197 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Chd6A3KFM7 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC11.28□□□□□ -0.6
Chd6A3KFM7 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Chd6A3KFM7 Ccdc166-201ENSMUST00000182172 2584 ntBASIC11.28□□□□□ -0.6
Chd6A3KFM7 Trpc7-206ENSMUST00000173513 2241 ntTSL 5 BASIC11.28□□□□□ -0.6
Chd6A3KFM7 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Chd6A3KFM7 Prdm10-202ENSMUST00000117389 1952 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Chd6A3KFM7 Sgce-201ENSMUST00000004750 1703 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Chd6A3KFM7 Rtbdn-203ENSMUST00000121880 1223 ntAPPRIS P2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Chd6A3KFM7 Brk1-201ENSMUST00000035725 1095 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Chd6A3KFM7 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Chd6A3KFM7 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Chd6A3KFM7 Gm3283-201ENSMUST00000199319 1350 ntBASIC11.28□□□□□ -0.6
Chd6A3KFM7 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Chd6A3KFM7 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Chd6A3KFM7 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
Chd6A3KFM7 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Chd6A3KFM7 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Chd6A3KFM7 AW822073-202ENSMUST00000204003 1959 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
Chd6A3KFM7 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Chd6A3KFM7 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Chd6A3KFM7 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC11.28□□□□□ -0.6
Chd6A3KFM7 A730062M13Rik-201ENSMUST00000192843 1910 ntBASIC11.28□□□□□ -0.6
Chd6A3KFM7 Hnrnpul1-201ENSMUST00000043765 3354 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Chd6A3KFM7 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Chd6A3KFM7 Nsg2-201ENSMUST00000020537 2239 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Chd6A3KFM7 Gm5687-201ENSMUST00000118252 640 ntBASIC11.28□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 43 ms